Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2220 ATGGCGCTTGTCATGCACAAAGATTCATCGAACAAACAAATGGATTCAAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCGAAGCCTAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCTATCCTTTCTAACATTGAGCCTAAGCAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGAGGAAGGAATCATCTCGCCTCCAGAGCGTAAATAGAAAGTTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAAAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATTCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTCACGATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGCGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCAAACAAAGGTTGCAGAAATTCTCAAAGATCGCCTTTCATGGTATCGTGACTGCCGCTGTCTTAATGTCTTAAGTGTAATTCCTACGGGAAATGGGGGAACAGTAGAGCTCATATATATGCAGACTTATGCTCCAACGACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTTTGTGAGAGGTCATTATCTACTTCAAGTGGTGGTCCAGCAGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAATACGAGCGTGCGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATCCTTGCTCAGAAAATGACAATTGCTGCATTGCGTCACATTAGACAAATTGCTCAGGAGACTAATGGAGAAATTCAATGTACTGGTGGACGTCAACCAGCTGTACTGAGGACGTTTAGTCAAAAACTTTGCAGGGGTTTTAACGATGCTGTCAACGGGTTTGCTGATGATGGTTGGTCACCTATGGGCAGTGATGGTGTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCTGGATCCCAGTACAACACGTCTTTGTATCCCTCTTTTGGCGGAGGAGTGATGTGTGCTAAAGCATCAATGTTGCTTCAGAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCTTACTCTGCTGCAAGTTTAAAAGCCAGTCCGTATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAAGTTATTTTGCCTCTTGCTCCTACTGTGGAGCACGAGGAGTTTTTGGAGGTGGTTCGATTGGAGGGCCTTGCATTCTCTCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGTGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCCCTACTTCCTTCAGGGTTTCGTGTCATACCGCTGGATCCGAAAACGGATGAGCCTACTGCTGCTAGAACACTGGATTTGGCCTCTACACTTGAAGTTGGTGCCAATGCTGCACGATCTGCTGGTGAAACTGATTTGAGCAGCTACAACCTTCGTTCAGTCTTGACTATTGCTTTCCAGTTCACATTTGAGAATCACTTACAGGAAAATGTGGCTGCTATGGCTCGACAATATGTTCGTAGTGTTGTTGGGTCAGTTCAGAGGGTTGCCATGGCCATTTCCCCTTCGCGGTTGAGTTCCAGTACGGGACTTAAGCCTCTTCCTGGTTCTCCCGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGCTACAGGACCCATGTTGGAGTTGAACTCCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGAAGCTCTGGCACCACTCCGACGCAATCATGTGTTGCTCTGTTAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTTGAAACCACTCTCGTTGGCCTGCAAGATATAATGCTGGACAAAATTCTCGATGAGGCGGGTCGGAAGATTCTTTGCTCTGAGTTCCCCAAAATAATGCAGCAGGGGTTCGCAAATCTTCCCTCGGGCATTTGCATATCCAGCATGGGCCGTCCCATTTCTTATGAGCAAGCCATTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTAGCTTTCATGGGAGGGGATGGGGCTAGGGTTTGCAATCTAATCCATGATAGTTCTTACGGGAAAATACAGGATCTTTTCTCTGGAATTGCAGCTGTTTTTAAGATTTTGTATTGCTTGCAGCCGTTTAAAAGCCCAATGATAATCCACTTGCAGCCCAAAAGAACGCCCACCTTCATCAATGTGCTGTGCATGCAAGTAGAACTGCTGTTAGTCTCCCATTGTACCAATAAAATCAGACTACAATCTTGGTTGAAACTATTCGATCAAGACATCGTTGAATCTGGGAGAAAGCAAATAAGGTGTACCATCATTCAGTCCGTCCCAAGAAAAAGAGAATCTCATTACGACTGCAACGAAAGCCAGTTTTTGGCCATTTGTCGACGAAATCCAATAAGAACCTTCTCTTCAATTAACAAGAGCAGGTAA 2937 46.14 MALVMHKDSSNKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDVNNPAGLLTIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEQTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTVELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLSTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQCTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGVEDVTIVINSSANKFPGSQYNTSLYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAISPSRLSSSTGLKPLPGSPEALTLARWICRSYRTHVGVELLQADSQSGDAMLKKLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICISSMGRPISYEQAIAWKVLNDDDSNHCLAFMGGDGARVCNLIHDSSYGKIQDLFSGIAAVFKILYCLQPFKSPMIIHLQPKRTPTFINVLCMQVELLLVSHCTNKIRLQSWLKLFDQDIVESGRKQIRCTIIQSVPRKRESHYDCNESQFLAICRRNPIRTFSSINKSR 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39972495 39981647 - CePI673135_04g022200.1 Cec04g2220 201702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2220 978 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Cec04g2220 978 CDD START_ArGLABRA2_like 161 377 - -
Cec04g2220 978 Pfam MEKHLA domain 702 840 IPR013978 -
Cec04g2220 978 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Cec04g2220 978 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 840 IPR044830 GO:0003700(InterPro)
Cec04g2220 978 Gene3D - 9 85 - -
Cec04g2220 978 MobiDBLite consensus disorder prediction 123 160 - -
Cec04g2220 978 Pfam START domain 167 374 IPR002913 GO:0008289(InterPro)
Cec04g2220 978 Gene3D - 201 385 IPR023393 -
Cec04g2220 978 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Cec04g2220 978 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Cec04g2220 978 CDD bZIP 70 109 - -
Cec04g2220 978 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Cec04g2220 978 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Cec04g2220 978 Coils Coil 83 107 - -
Cec04g2220 978 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Cec04g2220 978 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Cec04g2220 978 SUPERFAMILY Bet v1-like 167 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2220 Cec-Chr4:39972495 Cec09g0010 Cec-Chr9:98163 0.00E+00 dispersed
Cec01g1404 Cec-Chr1:28476426 Cec04g2220 Cec-Chr4:39972495 0.00E+00 transposed
Cec02g2227 Cec-Chr2:39687609 Cec04g2220 Cec-Chr4:39972495 0.00E+00 transposed
Cec03g0788 Cec-Chr3:8987006 Cec04g2220 Cec-Chr4:39972495 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29447 PF01852 START 1.30E-48 CL0209 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2220 K09338 - csv:101210154 1619.36