Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2221 ATGATGGCATGCCCTAATCAAGTTTCATTTGGTGTGCACTGCAAACCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATTGCAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGATGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGAATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCCCAAGAAACCTGAACATCTTTTGGGACTGGTGTGCTGA 801 42.95 MMACPNQVSFGVHCKPMTSSIHDYSDNGEADEQQKYSGSQNHSSSIVNGLSQPTIATPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRCRQSRAKAESENKALKSRKPYLHESRHLHELRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPEHPFFPKKPEHLLGLVC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39990435 39996041 - CePI673135_04g022210.1 Cec04g2221 201703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2221 266 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 196 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cec04g2221 266 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g2221 266 MobiDBLite consensus disorder prediction 31 52 - -
Cec04g2221 266 PRINTS CCAAT-binding transcription factor subunit B signature 130 152 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g2221 266 PRINTS CCAAT-binding transcription factor subunit B signature 161 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g2221 266 ProSiteProfiles NF-YA/HAP2 family profile. 127 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g2221 266 MobiDBLite consensus disorder prediction 23 52 - -
Cec04g2221 266 Gene3D - 127 188 - -
Cec04g2221 266 SMART cbf3 126 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2221 K08064 - - csv:101205549 312.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2221 Cec-Chr4:39990435 Cec11g0169 Cec-Chr11:1870049 1.30E-24 dispersed
Cec04g2221 Cec-Chr4:39990435 Cec09g0410 Cec-Chr9:3528581 3.70E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec02g2427 . 145 398 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 8.2e-54 207.6
Cec03g1373 . 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 61.4 5.4e-46 181.8
Cec04g2221 . 17 193 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.1 3.7e-45 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29448 PF02045 CBFB_NFYA 5.50E-23 No_clan Cec TF