Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2221 ATGATGGCATGCCCTAATCAAGTTTCATTTGGTGTGCACTGCAAACCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATTGCAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGATGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGAATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCCCAAGAAACCTGAACATCTTTTGGGACTGGTGTGCTGA 801 42.95 MMACPNQVSFGVHCKPMTSSIHDYSDNGEADEQQKYSGSQNHSSSIVNGLSQPTIATPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRCRQSRAKAESENKALKSRKPYLHESRHLHELRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPEHPFFPKKPEHLLGLVC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39990435 39996041 - CePI673135_04g022210.1 Cec04g2221 201703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2221 266 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 196 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cec04g2221 266 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g2221 266 MobiDBLite consensus disorder prediction 31 52 - -
Cec04g2221 266 PRINTS CCAAT-binding transcription factor subunit B signature 130 152 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g2221 266 PRINTS CCAAT-binding transcription factor subunit B signature 161 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g2221 266 ProSiteProfiles NF-YA/HAP2 family profile. 127 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g2221 266 MobiDBLite consensus disorder prediction 23 52 - -
Cec04g2221 266 Gene3D - 127 188 - -
Cec04g2221 266 SMART cbf3 126 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2221 Cec-Chr4:39990435 Cec11g0169 Cec-Chr11:1870049 1.30E-24 dispersed
Cec04g2221 Cec-Chr4:39990435 Cec09g0410 Cec-Chr9:3528581 3.70E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29448 PF02045 CBFB_NFYA 5.50E-23 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2221 K08064 - csv:101205549 312.768