Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2223 ATGAATAATCGCACACTGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTTTGTGCAGATTGTCGTGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGCTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGACGCCATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCTACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAAATCATGAACAGTTTTCGTTCAAATCCTTCACAAAAATCACAATTGCAGGAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTGATTAAAGGAACAAACTTAGCTATCAGGGATATGATGTCTAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAAGGTTTTGGAACCATAAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGACGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCCTTGATAACATCCGCCATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCATGATAACGCTCTCATAGCTGATAGCACTGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTTGAATGGATGGCTCTTGAACAATAG 1002 40.02 MNNRTLELGRPGSGKRRLRDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNPSQKSQLQEGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGTIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIADSTVNIVDGKVKQEISLKLQNVESGELDLELEWMALEQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40002986 40006747 + CePI673135_04g022230.1 Cec04g2223 201705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2223 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cec04g2223 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Cec04g2223 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cec04g2223 333 Gene3D C2 domain 174 333 IPR035892 -
Cec04g2223 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cec04g2223 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cec04g2223 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Cec04g2223 333 Gene3D Arf GTPase activating protein 6 135 IPR038508 -
Cec04g2223 333 SMART C2_3c 178 273 IPR000008 -
Cec04g2223 333 CDD ArfGap 27 124 - -
Cec04g2223 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cec04g2223 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Cec04g2223 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 321 IPR035892 -
Cec04g2223 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cec04g2223 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cec04g2223 333 CDD C2_ArfGAP 176 320 - -
Cec04g2223 333 ProSiteProfiles C2 domain profile. 159 274 IPR000008 -
Cec04g2223 333 Pfam C2 domain 177 265 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1576 Cec-Chr1:30345307 Cec04g2223 Cec-Chr4:40002986 3.60E-23 dispersed
Cec04g2223 Cec-Chr4:40002986 Cec05g2910 Cec-Chr5:39200129 2.40E-87 dispersed
Cec01g0783 Cec-Chr1:8621012 Cec04g2223 Cec-Chr4:40002986 6.30E-91 transposed
Cec03g0789 Cec-Chr3:8998241 Cec04g2223 Cec-Chr4:40002986 4.50E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2223 K12486 - csv:101218116 636.721