Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2230 ATGGAATCGGTGGCAGACACCAAAGCAAAGATGTTGCTAACGCTAACCACGTGGAAATCAAAGCGAGTAAAAATCAAGCTCCCCAAAGAAGCAAAGGAAGAAAATCACAAAACGATCAATAACAACAACGAGGATGAACGAGAGGAGAATTTGGAAGATGAGGGAGGCTCGACACAAATAAAACAACGAGAAGTTATTTATGGATCTCATCTAGTACAAGGCAAAATGAATCATGGAATGGAAGACTATATCATTACCGAAGAACGACATGTCGACGACCACATGCTGGGACTATTTGCAATATTTGATGGCCACTCCGGTCGCGATGTCACAGAGTACTTGCAGAGCCATCTGTTTGGTAACATCCTAAGCCAGTCTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGAGAGCATGTAAAGCAACAGATGAGGAGATTTTAGCTAAAAAGGTGGGAAAGAGAGGAGGTTCAACAGCAGTTACAGCTATACTAATAGATGGGCAGACGCTAATCATCGCACACGTAGGCGACTCACGGGCAGTGATATGCAGGAATGGCTCAGCAAAACCGATTACGGTCGATCACGAACCAGAGGAGGAGAAGGAGCTTGTTGAGAGCCGAGGCGGATTTGTTGAAAAATGCCAGGAAGTGTGCCACGGGTGGATGGTCAGCTAG 678 45.87 MESVADTKAKMLLTLTTWKSKRVKIKLPKEAKEENHKTINNNNEDEREENLEDEGGSTQIKQREVIYGSHLVQGKMNHGMEDYIITEERHVDDHMLGLFAIFDGHSGRDVTEYLQSHLFGNILSQSDFWEDPEGAIRRACKATDEEILAKKVGKRGGSTAVTAILIDGQTLIIAHVGDSRAVICRNGSAKPITVDHEPEEEKELVESRGGFVEKCQEVCHGWMVS 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40053214 40055160 - CePI673135_04g022300.1 Cec04g2230 201712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2230 225 SUPERFAMILY PP2C-like 65 214 IPR036457 -
Cec04g2230 225 MobiDBLite consensus disorder prediction 29 45 - -
Cec04g2230 225 Gene3D - 26 225 IPR036457 -
Cec04g2230 225 ProSiteProfiles PPM-type phosphatase domain profile. 66 225 IPR001932 -
Cec04g2230 225 Pfam Protein phosphatase 2C 76 219 IPR001932 -
Cec04g2230 225 SMART PP2C_4 62 224 IPR001932 -
Cec04g2230 225 Coils Coil 29 49 - -
Cec04g2230 225 PANTHER PROTEIN PHOSPHATASE 45 224 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cec04g2230 225 CDD PP2Cc 65 196 IPR001932 -
Cec04g2230 225 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2230 Cec-Chr4:40053214 Cec11g1838 Cec-Chr11:32569232 2.80E-47 dispersed
Cec04g2230 Cec-Chr4:40053214 Cec07g0291 Cec-Chr7:2857153 5.60E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2230 K14803 - csv:101211141 290.426