Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2251 ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGATCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTAATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACATGATCTTCATCAAGAGCTGGATAATACTAATAATAATACTTTTTTCAATGGAATTACTACTACTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAATTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCCTCCGCCCTTCACATCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGCTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCCAAAAACAACAACATTACTACTACTACTTCTTCAACTTCAACAACAACACCCAATTCTTCAAAACTCTCTCAAGATCATCACCACAAAAATAAGGAAGAAAAAGAAGAACATCAAGATCAAAACAAGGGAACATTATTATCAGCTGCAGCAACAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAATTGAGAACCATCATCATCAATCGATGATGAGTGAAGGGTTTGATGATGATCATGATTTCTTTGCAGATTTGGAAGAATTACAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACGACCCCCACTGCTACTACTGGTTGCTTACACGACGTTGTTCCATTCAATAATCTCTTTGATTGGCCACCACCTCCTTTAAACAACAATTCAACTCCATTTCATGAACAACCACCACCTACTACTCCTACCAACAGAGGTTTTTATTAA 1434 39.12 MLLLFEMENYEEGDLTDIVRGGRSRSRSTTRSSTSNCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHHHHQYSFGDPFCSTVAASHDLHQELDNTNNNTFFNGITTTTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTTPNSSKLSQDHHHKNKEEKEEHQDQNKGTLLSAAATTTSNNNNNVKEEEIENHHHQSMMSEGFDDDHDFFADLEELQTDPLTLLFTTQQPLKLDQIKESATTTPTATTGCLHDVVPFNNLFDWPPPPLNNNSTPFHEQPPPTTPTNRGFY 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40147310 40150396 - CePI673135_04g022510.1 Cec04g2251 201733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2251 477 SMART WRKY_cls 236 296 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2251 477 MobiDBLite consensus disorder prediction 20 59 - -
Cec04g2251 477 MobiDBLite consensus disorder prediction 280 333 - -
Cec04g2251 477 ProSiteProfiles WRKY domain profile. 231 297 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2251 477 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 405 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cec04g2251 477 Pfam WRKY DNA -binding domain 238 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2251 477 MobiDBLite consensus disorder prediction 173 214 - -
Cec04g2251 477 Gene3D WRKY domain 210 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2251 477 MobiDBLite consensus disorder prediction 22 39 - -
Cec04g2251 477 MobiDBLite consensus disorder prediction 253 354 - -
Cec04g2251 477 SUPERFAMILY WRKY DNA-binding domain 235 297 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2251 477 MobiDBLite consensus disorder prediction 334 353 - -
Cec04g2251 477 FunFam probable WRKY transcription factor 14 210 290 - -
Cec04g2251 477 MobiDBLite consensus disorder prediction 455 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0845 Cec-Chr3:10260934 Cec04g2251 Cec-Chr4:40147310 9.40E-54 dispersed
Cec04g2251 Cec-Chr4:40147310 Cec05g0152 Cec-Chr5:1266840 2.90E-38 dispersed
Cec04g2251 Cec-Chr4:40147310 Cec01g0090 Cec-Chr1:744261 4.80E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29449 PF03106 WRKY 2.70E-25 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2251 - - - 0.0