Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2268 ATGGGGAAGAAGAAGAAGAGAGTTTCGTCTAAGGTATGGTGCTACTATTGCGACAGAGAATTCGATGACGAGAAGATATTGGTGCAGCATCAGAAGGCTAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCCGGCGGTATGGTCATTCACGTTCTTCAGGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAAGCAACAGATATCGAAATATACGGAATGCAAGGAATTCCACCGGACGTCTTGGCAGCACATTATGGAGAGGAGGAGGAAGAGTCCTTGTCGAAGGTGGCCAAAGTGGAGATGCCATCAACTCAGATGGTTGGAGGTGTGGTGCCCGGATCACTGGGTATTGTATACCCTCCTCAGCCAGGTTTAGCTGCAATGCAACCTATTTATCCTTCGACTGGACAAGCACAGCCTACTGCCTGGCCAGTTCCACCTCGTCCCCAACCTTGGTTCCCCCCAAATTCAGCTGTTTCAATTCCTCCTCCTGCCCAATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCTCCACTTCCAGTATCATCAACTCCTATGCTCCAGCCTTTACAGATAACGCCTCCTGGATTGACGTCAACTACACCTTCAGTTTCTGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGACCTACCCAAAGCTCTCCTTTTTCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCGGCAGCAGATATCAAGGGCTCAGTGACACATCTGGGCACCAACTCCTTTTCTACAATTGGAAATCAAGTTTCAAACATTCCAGGTGCAATATTAAGCAATTCACATTCCTATGCCTCGGGACCAAATACAGGTGGTCCTTCTATCGGACCACCTCCTGTAATTGCGAATAAGGCTCCTACTCAACCATCAACGAATGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGTTTGCACGCCATACCACCAATCTTGTGGGCATCAAAAGGCTCAACCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCATTTTAGTTCAAGCCATGTTGACAGTTTTTAGGTTTGATGTGCTTGGAGGAGAAAAGGAAAAAATGCAAACCACTGGGGCTTTAAGGGCTCTGAGAATAGCCACCACGATTCATGCTCGAACCAACCAGATTTTCCTCCTAAATCCAATACTTTCCCCTCGATGCTACTCTGCCCAGCCTGAGCAAGACGATTCTAATCACAACCCTACTCTCTCGGACACTGAAAATGCCCCTGATTCCGTATTTGATAGTGCACAGTTCGCCATTCCAAACATGGATTCAAGTACTAAAACCGAGGCTCACTCCGGTTGGGATAAGAAATATAGGGCAAAAGCCGACCAACTGATATTTGGAAAAGATTCCGGGGGAGTCAAATACAAGATAATGGAGGAGGAGGAGGAAAGGCGACGGAGACTGCTTGCCAAGGCTCTGCTTGAGGCGGCCTTGGAAACTCCTGACGATGACGAAGAGGATGAAGAGACAACTGTGAAAGAGGAAGACCAGAAGTCTCTGGCAGTGGGGATAATTGGCGCACCGAACGCTGGCAAGTCCGCATTGACTAACTATATGTGTTTCTTCGACACACCAGGGCTAATGTTAAAGAGCAAGGGATTTCCTCATAAAGATATGAAAGCTCGTGTGCAAAGTGCTTGGAGTTCAGTTGAACTTTACGATGTGTTGATAGTTATTTTTGACGTCCATAGACATCTTACAAGCTCCATTTATGCTACTTTTGTGGTCAACCCTGATGATGTAGCAGTTGACTTTTGGATTTTATATAGGCCTGATTCGAGGGTGGTGGGACTGATCAAACGAATGGGAGCATCACTACACCCAAAACAGAAGCGTATATTATGTATGAACAAAGTTGATCTAGTCGAAAACAAGAAAGACTTGTTAACAGTTGCAGAACAATTTAAAGATCTTCCCGGATATGAAAGGTACTTCATGATCTCAGGGCTAAAGGGAGCTGGAGTAAAAGATCTTTCAAAATATTTGACGGAACAGGCATGTTTCCTATTTGGTTTCAATGCTATTATTCAGAGGAATATACTCAAAAGACCTTGGGATGAAGATCCATACACTATGAATGAAGAAATGATGAAGAACATTTCACTTGAAGTTGTCCGGGAACGGTTGTTAGACCATGTGCATCAGGAAATTCCTTATGGAATTGAGCATCGCCTGGTCGATTGGAAAGAATTTCGAGATGGTTCTCTTAGGATTGAGCAACACTTGATCACTAACAAACCAAGTCAGCGCAAAATTCTTGTGGGGAAAAACGGCTCTAAAATTGGGAGAATAGGTATTGAAGCTAATGAAGAGCTAAGATATCTTCCACTCCTTAATTTATGGTGGACGCGAGGAAAGGATGGAGGCTTCCGAGATGGAAATGCATTTTGA 2544 44.85 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGREATDIEIYGMQGIPPDVLAAHYGEEEEESLSKVAKVEMPSTQMVGGVVPGSLGIVYPPQPGLAAMQPIYPSTGQAQPTAWPVPPRPQPWFPPNSAVSIPPPAQLGYAQQPLFPVQTARPPLPVSSTPMLQPLQITPPGLTSTTPSVSVSQPLFPVVSNSHGPTQSSPFSSSTLSTSIPLTSAADIKGSVTHLGTNSFSTIGNQVSNIPGAILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQFARHTTNLVGIKRLNHRQTNLGKQACWPNAILVQAMLTVFRFDVLGGEKEKMQTTGALRALRIATTIHARTNQIFLLNPILSPRCYSAQPEQDDSNHNPTLSDTENAPDSVFDSAQFAIPNMDSSTKTEAHSGWDKKYRAKADQLIFGKDSGGVKYKIMEEEEERRRRLLAKALLEAALETPDDDEEDEETTVKEEDQKSLAVGIIGAPNAGKSALTNYMCFFDTPGLMLKSKGFPHKDMKARVQSAWSSVELYDVLIVIFDVHRHLTSSIYATFVVNPDDVAVDFWILYRPDSRVVGLIKRMGASLHPKQKRILCMNKVDLVENKKDLLTVAEQFKDLPGYERYFMISGLKGAGVKDLSKYLTEQACFLFGFNAIIQRNILKRPWDEDPYTMNEEMMKNISLEVVRERLLDHVHQEIPYGIEHRLVDWKEFRDGSLRIEQHLITNKPSQRKILVGKNGSKIGRIGIEANEELRYLPLLNLWWTRGKDGGFRDGNAF 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40324613 40336170 - CePI673135_04g022680.1 Cec04g2268 201750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2268 847 Gene3D - 571 718 IPR027417 -
Cec04g2268 847 MobiDBLite consensus disorder prediction 437 458 - -
Cec04g2268 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 716 IPR027417 -
Cec04g2268 847 Pfam KH domain 767 824 IPR004044 GO:0003723(InterPro)
Cec04g2268 847 CDD KH-II_Era 754 826 - -
Cec04g2268 847 SMART c2h2final6 12 35 IPR013087 -
Cec04g2268 847 SMART c2h2final6 36 59 IPR013087 -
Cec04g2268 847 MobiDBLite consensus disorder prediction 438 458 - -
Cec04g2268 847 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cec04g2268 847 CDD SUF4-like 13 92 - -
Cec04g2268 847 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 748 826 IPR009019 GO:0003723(InterPro)
Cec04g2268 847 Gene3D - 744 827 IPR015946 -
Cec04g2268 847 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
Cec04g2268 847 Gene3D - 531 570 IPR027417 -
Cec04g2268 847 PANTHER ZINC FINGER PROTEIN 207 1 356 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cec04g2268 847 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cec04g2268 847 Gene3D Classic Zinc Finger 2 66 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29451 PF07650 KH_2 5.10E-06 CL0007 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2268 K27810 - csv:101206973 652.514