Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec04g2312 | ATGGAGAGCCACGGAGCCGGTAGTTATTTCGTGGACGAGAAGGCCGTCCTCGTCGAGAACATTTTCTTCGACTTCCTTAAGAGCTTTCGCCTCAATGGGAACTCTGGAGAACCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTTATTGATTTCGCTCACCTCATGGGTTCCAATAATCTTCTTCACATTGCAATCGCCGACGAATATCTGAGGTTTGAACCTTACCTGAAGAACGCTTGTAAGCGGTTCGTAATGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCATTCAAGGACATAAATGTTGCTTTCTTCAACATTCCTGTTTCTAAAAGGTTGAGAGAATTGACTACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTTGTGACGCGAACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTTGAACAACAATTTAAGTACACCGAGCCAACAATATGCATGAACCCGACCTGTTCAAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCAGCTGGCTCTCTTCCACGATCTCTGGATGTTATTCTCCGCCATGAAATGGTTGAACGAGCTAGGGCTGGAGACACGGTCATCTTCACAGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGGAACGCTGCGGTTGGGCATGAAGGAATGAGGGGGCTACGAGCCCTAGGAGTGAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGAATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAATTTACTGCTGCAGAGCTTGATGACGTTCAAAGAATGAGGAATACACCTGACTTTTTCAATAGACTTGTTGATAGCATTGCACCAGCAGTTTTTGGCCATCAAGATATCAAGCGAGCAATCCTGTTGATGCTGTTAGGTGGTGTCCACAAGTTGACTCATGAAGGCATTAACCTTCGAGGTGACATCAACGTTTGTATAGTAGGAGATCCAAGCTGTGCGAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATTACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACGTCAATCCTCGCTGCTGCTAATCCTACAGGAGGACGCTATGACAAATCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCATATTGCACATCACATTGTGAGAGTACATCAGAAGCATGAAGATGCTCTCTCTCCTGCATTTACTACTGCAGAGTTGAAGCGCTACATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTCACTCTTCGCAGAGGAGATACAGCTCCTGGAAGTAGGGTTGCCTATCGCATGACAGTTAGGCAGCTCGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTTCAATCGCGTCATGTGCGTTTAGCAGTGACTTTACTGAAAACGTCAATAATCAGTGTGGAATCTAGTGAGATTGACCTATCTGAATTTGAAGAAGAAACTAATGGAGGTGGAGATGGTGATAATAATGTCGACGATGGGCCTAATGAGGTTGATGCTGAACCTAGGAAAGGTGCAACAGAGCCAACTACTGGAAATAGTGGTTCTGCAAGTAAACATAGGAAGGAGAAACTTCTTGTGAGTGATGAATATTTCCAGAGGGTTACTCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAACATGCGATGCAAGAAGGACTTGGGCTAGCGGGAATGAGGCAGAGAGACTTAATTGAGTGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCCATGGAGGAGGCAGATAAAGAAATCAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTAAACGAAGGCCATTTGATAGTGGTAGATGACGGGAGGCCAGTGGATGGCGAGGTTGAAGGCGAACCGCCATTAGTAAGAATTAGAAATAACAGGATTTTAGCTGTGGCTCCTAATTATATCGTTGATTGA | 2508 | 44.1 | MESHGAGSYFVDEKAVLVENIFFDFLKSFRLNGNSGEPYYEAEIEAMMAGESNTMFIDFAHLMGSNNLLHIAIADEYLRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERRNAAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRNFDIRNRKKDADEDNQQFTAAELDDVQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVTLRRGDTAPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTSIISVESSEIDLSEFEEETNGGGDGDNNVDDGPNEVDAEPRKGATEPTTGNSGSASKHRKEKLLVSDEYFQRVTQALVMRLRQHEEHAMQEGLGLAGMRQRDLIEWYVDQQNERNSYSSMEEADKEIKLVRAIIQHLIVNEGHLIVVDDGRPVDGEVEGEPPLVRIRNNRILAVAPNYIVD | 835 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 40701561 | 40708268 | + | CePI673135_04g023120.1 | Cec04g2312 | 201794 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec04g2312 | 835 | FunFam | DNA helicase | 149 | 200 | - | - | |
| Cec04g2312 | 835 | Pfam | MCM N-terminal domain | 21 | 115 | IPR027925 | - | |
| Cec04g2312 | 835 | Gene3D | - | 327 | 672 | IPR027417 | - | |
| Cec04g2312 | 835 | SUPERFAMILY | Nucleic acid-binding proteins | 22 | 252 | IPR012340 | - | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 475 | 488 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 499 | 511 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 447 | 461 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 526 | 534 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 387 | 402 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 169 | 186 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 281 | 302 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 119 | 131 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 77 | 89 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2312 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 222 | 233 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2312 | 835 | Gene3D | - | 10 | 118 | - | - | |
| Cec04g2312 | 835 | Pfam | MCM6 C-terminal winged-helix domain | 716 | 833 | IPR041024 | - | |
| Cec04g2312 | 835 | Pfam | MCM AAA-lid domain | 571 | 656 | IPR041562 | - | |
| Cec04g2312 | 835 | Gene3D | - | 149 | 200 | - | - | |
| Cec04g2312 | 835 | FunFam | DNA helicase | 331 | 661 | - | - | |
| Cec04g2312 | 835 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 17 | 767 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Cec04g2312 | 835 | MobiDBLite | consensus disorder prediction | 667 | 714 | - | - | |
| Cec04g2312 | 835 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 657 | IPR027417 | - | |
| Cec04g2312 | 835 | Pfam | MCM P-loop domain | 335 | 556 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2312 | 835 | Gene3D | - | 122 | 250 | IPR012340 | - | |
| Cec04g2312 | 835 | SMART | mcm | 118 | 657 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2312 | 835 | Pfam | MCM OB domain | 122 | 250 | IPR033762 | - | |
| Cec04g2312 | 835 | CDD | MCM6 | 349 | 655 | - | - | |
| Cec04g2312 | 835 | ProSitePatterns | MCM family signature. | 455 | 463 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cec04g2312 | 835 | Gene3D | - | 712 | 835 | - | - | |
| Cec04g2312 | 835 | ProSiteProfiles | MCM family domain profile. | 346 | 552 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec04g2312 | K02542 | - | - | csv:101219775 | 1537.32 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec02g0506 | Cec-Chr2:4723559 | Cec04g2312 | Cec-Chr4:40701561 | 3.80E-99 | dispersed | |
| Cec04g2312 | Cec-Chr4:40701561 | Cec09g0509 | Cec-Chr9:4363735 | 3.60E-92 | dispersed |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cec08g0257 | . | 105 | 657 | Core DNA Replication Machinery Family | AT4G14700 | 65.9 | 2.0e-212 | 736.1 | |
| Cec08g0257 | . | 105 | 660 | Core DNA Replication Machinery Family | AT4G12620 | 67.7 | 9.8e-220 | 760.4 | |
| Cec08g1624 | . | 65 | 425 | Core DNA Replication Machinery Family | AT2G37560 | 64.8 | 5.6e-140 | 494.2 | |
| Cec07g0530 | . | 9 | 410 | Core DNA Replication Machinery Family | AT2G01120 | 64.3 | 1.5e-150 | 529.6 | |
| Cec06g0376 | . | 3 | 531 | Core DNA Replication Machinery Family | AT4G29910 | 58.0 | 1.5e-171 | 599.7 | |
| Cec11g0910 | . | 1 | 283 | Core DNA Replication Machinery Family | AT1G26840 | 66.1 | 6.5e-94 | 340.9 | |
| Cec09g2365 | . | 68 | 863 | Core DNA Replication Machinery Family | AT1G79150 | 58.8 | 1.0e-243 | 840.1 | |
| Cec10g1313 | . | 8 | 940 | Core DNA Replication Machinery Family | AT1G44900 | 75.5 | 0.0e+00 | 1352.8 | |
| Cec04g2153 | . | 128 | 702 | Core DNA Replication Machinery Family | AT5G46280 | 81.0 | 8.0e-269 | 922.9 | |
| Cec02g0506 | . | 192 | 1036 | Core DNA Replication Machinery Family | AT2G16440 | 75.9 | 0.0e+00 | 1147.5 | |
| Cec11g0370 | . | 1 | 735 | Core DNA Replication Machinery Family | AT2G07690 | 78.4 | 0.0e+00 | 1111.7 | |
| Cec04g2312 | . | 7 | 835 | Core DNA Replication Machinery Family | AT5G44635 | 71.6 | 0.0e+00 | 1173.3 | |
| Cec09g0509 | . | 4 | 722 | Core DNA Replication Machinery Family | AT4G02060 | 85.3 | 0.0e+00 | 1220.3 | |
| Cec02g2065 | . | 55 | 512 | Core DNA Replication Machinery Family | AT2G29680 | 61.4 | 6.7e-158 | 554.3 | |
| Cec02g2065 | . | 37 | 482 | Core DNA Replication Machinery Family | AT1G07270 | 58.8 | 1.5e-143 | 506.5 | |
| Cec09g0868 | . | 1 | 593 | Core DNA Replication Machinery Family | AT3G25100 | 76.2 | 3.3e-257 | 884.4 | |
| Cec10g2063 | . | 12 | 783 | Core DNA Replication Machinery Family | AT3G09660 | 73.8 | 0.0e+00 | 1109.4 | |
| Cec09g1700 | . | 22 | 420 | Core DNA Replication Machinery Family | AT2G14050 | 85.2 | 4.6e-196 | 681.4 | |
| Cec09g1698 | . | 9 | 242 | Core DNA Replication Machinery Family | AT2G14050 | 67.9 | 1.7e-86 | 317.4 | |
| Cec02g1251 | . | 1926 | 2304 | Core DNA Replication Machinery Family | AT2G20980 | 56.2 | 6.5e-108 | 387.9 | |
| Cec09g0268 | . | 1 | 192 | Core DNA Replication Machinery Family | AT1G80190 | 67.5 | 1.0e-72 | 270.0 | |
| Cec11g0642 | . | 5 | 188 | Core DNA Replication Machinery Family | AT1G19080 | 68.5 | 1.9e-70 | 262.3 | |
| Cec11g0642 | . | 5 | 188 | Core DNA Replication Machinery Family | AT3G55490 | 68.5 | 1.9e-70 | 262.3 | |
| Cec05g0169 | . | 15 | 164 | Core DNA Replication Machinery Family | AT5G49010 | 65.3 | 1.1e-49 | 193.4 | |
| Cec02g1303 | . | 9 | 1536 | Core DNA Replication Machinery Family | AT5G67100 | 60.4 | 0.0e+00 | 1744.6 | |
| Cec01g1709 | . | 118 | 740 | Core DNA Replication Machinery Family | AT1G67630 | 60.5 | 2.1e-214 | 742.3 | |
| Cec06g0212 | . | 1 | 447 | Core DNA Replication Machinery Family | AT1G67320 | 64.0 | 2.9e-182 | 635.2 | |
| Cec08g0101 | . | 196 | 639 | Core DNA Replication Machinery Family | AT5G41880 | 65.0 | 2.2e-176 | 615.5 | |
| Cec04g1199 | . | 1 | 1086 | Core DNA Replication Machinery Family | AT5G63960 | 80.7 | 0.0e+00 | 1797.7 | |
| Cec10g1767 | . | 1 | 438 | Core DNA Replication Machinery Family | AT2G42120 | 75.6 | 1.3e-205 | 712.6 | |
| Cec06g0212 | . | 1 | 447 | Core DNA Replication Machinery Family | AT1G67320 | 64.0 | 2.9e-182 | 635.2 | |
| Cec01g0547 | . | 1 | 127 | Core DNA Replication Machinery Family | AT1G09815 | 61.5 | 4.9e-38 | 154.1 | |
| Cec02g2314 | . | 1 | 2095 | Core DNA Replication Machinery Family | AT1G08260 | 71.6 | 0.0e+00 | 2988.0 | |
| Cec09g2157 | . | 83 | 2096 | Core DNA Replication Machinery Family | AT1G08260 | 68.2 | 0.0e+00 | 2788.4 | |
| Cec02g2314 | . | 25 | 2202 | Core DNA Replication Machinery Family | AT2G27120 | 68.2 | 0.0e+00 | 2955.6 | |
| Cec09g2157 | . | 106 | 2203 | Core DNA Replication Machinery Family | AT2G27120 | 65.1 | 0.0e+00 | 2751.1 | |
| Cec01g1812 | . | 681 | 1116 | Core DNA Replication Machinery Family | AT5G22110 | 71.1 | 3.1e-184 | 641.7 | |
| Cec02g2368 | . | 74 | 998 | Core DNA Replication Machinery Family | AT5G22010 | 63.2 | 7.7e-306 | 1046.6 | |
| Cec10g0359 | . | 1 | 331 | Core DNA Replication Machinery Family | AT1G63160 | 91.3 | 2.8e-173 | 604.7 | |
| Cec04g0586 | . | 1 | 354 | Core DNA Replication Machinery Family | AT5G27740 | 85.0 | 4.1e-178 | 620.9 | |
| Cec11g1645 | . | 63 | 381 | Core DNA Replication Machinery Family | AT1G21690 | 81.6 | 1.6e-144 | 509.2 | |
| Cec08g0611 | . | 1 | 363 | Core DNA Replication Machinery Family | AT1G77470 | 76.3 | 1.3e-155 | 546.2 | |
| Cec11g0165 | . | 26 | 607 | Core DNA Replication Machinery Family | AT2G06510 | 67.7 | 3.0e-245 | 844.7 | |
| Cec10g0110 | . | 32 | 703 | Core DNA Replication Machinery Family | AT2G06510 | 50.3 | 3.4e-196 | 681.8 | |
| Cec06g1758 | . | 1 | 623 | Core DNA Replication Machinery Family | AT5G08020 | 67.9 | 1.8e-247 | 852.0 | |
| Cec10g0110 | . | 10 | 812 | Core DNA Replication Machinery Family | AT5G45400 | 50.3 | 5.1e-227 | 784.6 | |
| Cec06g1758 | . | 1 | 618 | Core DNA Replication Machinery Family | AT5G61000 | 65.6 | 1.5e-239 | 825.9 | |
| Cec10g0110 | . | 5 | 798 | Core DNA Replication Machinery Family | AT4G19130 | 53.4 | 1.5e-225 | 779.6 | |
| Cec03g1851 | . | 1 | 568 | Core DNA Replication Machinery Family | AT5G26680 | 58.5 | 5.8e-168 | 587.4 | |
| Cec05g0315 | . | 1 | 1110 | Core DNA Replication Machinery Family | AT1G08840 | 52.5 | 3.3e-300 | 1028.1 | |
| Cec07g1686 | . | 1 | 282 | Core DNA Replication Machinery Family | AT2G25100 | 66.7 | 7.7e-108 | 387.1 | |
| Cec02g2268 | . | 2 | 762 | Core DNA Replication Machinery Family | AT1G08130 | 69.2 | 8.7e-298 | 1019.6 | |
| Cec02g2268 | . | 162 | 762 | Core DNA Replication Machinery Family | AT1G49250 | 69.1 | 3.3e-242 | 834.7 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007427 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 6 | 1 | 2 | 1 | 1 | 0 | 1 | 0 | 33 |