Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2320 ATGAACCTTTGGGTTCCAAGGGCCATTTCCATCCATCCTCTGTCAGGTCAAGGAGGGAAAACAATAGTAGATAGGCGGGACCATTCATCGATTTCATTTTCAATGAGATGTCTCCTCAATTGCTTACCATTGAGAGGAAGGCCTAAGTATGATATGGGCCAAGATCCAGACTTGCAACCGAAGTCGTTTGCCAATGCACTAGTCATTCCAATATCCATGTTAATGCCTAAGAATTTTGATTTCATGTGGTTGATTCGAAGACCCGATGCAACTTCAAAGCTTCCCGCGATTTCGGAAGAAGAAGACAGCAGCCGAGCAACCGCTGAAATCTCACTGCCCCTTTTGAACTCACTCCTTCTCTTCTTGCCGCCGTCGCTCACGGGCACGCCAGCCCCTCCATCTCTCTGTTCCTTGTCCTTAAGGGGAATAATTAGACAGATGGAGATCGGGAAACATAATGATGATGGAGATGATAAAACAAAAAACAGAAAATCCAATATTTGCCAGGAATGTGGCGCTGAGTTCAGGAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTTGAGGAACAAATCCTTAAATATAATAAAATAATTGGGCCTCGGTCACGCTACAGTAGTCTGAGAGGCCATATATCTGTTCCACACTTGAAAGAATGCCATGGAGGTGAAGCTCCTCCTGGAGAATGTCAGAAGCAGTTTGTTTGCCCCGAAGATGGATGTGGAAAAGTTTTCAGATATGCCTCTCAATTGCAAAAGCATGAGGATTCCCATGTCAAACTAGACTCAACAGAGGCATGTTGTACTGAACCGGGTTGCTCGAGAACATTTACCAACAAGCAATGCCTAAGGGCTCATATGCAGTCCTGCCACCAATACATCAAATGTGAGATTTGTGGGGAAAAAAAATTAAGAAAGAACTTGAAGCAACATCTACGACAGAAGCATGAAAGTGAAGGTCCACTGGAGGCAATTCCATGCAGGTATGAGGGCTGCAGCAAGGTTTTTTCAACAGCTTCAAATCTCCAGCAACACATGAAGGTTGTGCATATGGGACAAAAGCCGTTTGCATGTTGTTTCCCTGGTTGTGGCATGAGATTTGGGTATAAGCATGTGAGAGACAACCATGAGAAAAGTGGCCAGCATGTTTACACTAATGGGGATTTTGAAGCAGCTGATGAACACTTCCGCTCAAAACCAAGGGGAGGGAGAAAAAGAATCTGTCCAACTGTTGAAATGCTCATAAGGAAGAGGGTTACCCCCCCAAGTGAGTTTGATTTCACGATTGATGAAGAATGTTAG 1308 44.5 MNLWVPRAISIHPLSGQGGKTIVDRRDHSSISFSMRCLLNCLPLRGRPKYDMGQDPDLQPKSFANALVIPISMLMPKNFDFMWLIRRPDATSKLPAISEEEDSSRATAEISLPLLNSLLLFLPPSLTGTPAPPSLCSLSLRGIIRQMEIGKHNDDGDDKTKNRKSNICQECGAEFRKPAYLKQHMQSHSLEEQILKYNKIIGPRSRYSSLRGHISVPHLKECHGGEAPPGECQKQFVCPEDGCGKVFRYASQLQKHEDSHVKLDSTEACCTEPGCSRTFTNKQCLRAHMQSCHQYIKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCRYEGCSKVFSTASNLQQHMKVVHMGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTNGDFEAADEHFRSKPRGGRKRICPTVEMLIRKRVTPPSEFDFTIDEEC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40785222 40790993 - CePI673135_04g023200.1 Cec04g2320 201802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2320 435 SUPERFAMILY beta-beta-alpha zinc fingers 308 364 IPR036236 -
Cec04g2320 435 PANTHER ZINC FINGER PROTEIN 156 428 IPR051061 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0006357(PANTHER)|GO:0080084(PANTHER)
Cec04g2320 435 SMART c2h2final6 296 318 IPR013087 -
Cec04g2320 435 SMART c2h2final6 236 260 IPR013087 -
Cec04g2320 435 SMART c2h2final6 327 352 IPR013087 -
Cec04g2320 435 SMART c2h2final6 358 384 IPR013087 -
Cec04g2320 435 SMART c2h2final6 166 188 IPR013087 -
Cec04g2320 435 SMART c2h2final6 268 293 IPR013087 -
Cec04g2320 435 ProSitePatterns Zinc finger C2H2 type domain signature. 329 352 IPR013087 -
Cec04g2320 435 ProSitePatterns Zinc finger C2H2 type domain signature. 360 384 IPR013087 -
Cec04g2320 435 Gene3D Classic Zinc Finger 324 400 - -
Cec04g2320 435 Gene3D Classic Zinc Finger 224 296 - -
Cec04g2320 435 ProSitePatterns Zinc finger C2H2 type domain signature. 270 293 IPR013087 -
Cec04g2320 435 ProSitePatterns Zinc finger C2H2 type domain signature. 238 260 IPR013087 -
Cec04g2320 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Cec04g2320 435 Pfam Zinc finger, C2H2 type 168 188 IPR013087 -
Cec04g2320 435 Pfam Zinc finger, C2H2 type 236 260 IPR013087 -
Cec04g2320 435 Pfam Zinc finger, C2H2 type 329 352 IPR013087 -
Cec04g2320 435 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Cec04g2320 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 327 357 IPR013087 -
Cec04g2320 435 Gene3D Classic Zinc Finger 167 189 - -
Cec04g2320 435 SUPERFAMILY beta-beta-alpha zinc fingers 166 260 IPR036236 -
Cec04g2320 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 265 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2320 Cec-Chr4:40785222 Cec05g2922 Cec-Chr5:39375446 1.80E-140 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29458 PF00096 zf-C2H2 6.20E-05 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2320 K09191 - csv:101217595 496.893