Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g2320 | ATGAACCTTTGGGTTCCAAGGGCCATTTCCATCCATCCTCTGTCAGGTCAAGGAGGGAAAACAATAGTAGATAGGCGGGACCATTCATCGATTTCATTTTCAATGAGATGTCTCCTCAATTGCTTACCATTGAGAGGAAGGCCTAAGTATGATATGGGCCAAGATCCAGACTTGCAACCGAAGTCGTTTGCCAATGCACTAGTCATTCCAATATCCATGTTAATGCCTAAGAATTTTGATTTCATGTGGTTGATTCGAAGACCCGATGCAACTTCAAAGCTTCCCGCGATTTCGGAAGAAGAAGACAGCAGCCGAGCAACCGCTGAAATCTCACTGCCCCTTTTGAACTCACTCCTTCTCTTCTTGCCGCCGTCGCTCACGGGCACGCCAGCCCCTCCATCTCTCTGTTCCTTGTCCTTAAGGGGAATAATTAGACAGATGGAGATCGGGAAACATAATGATGATGGAGATGATAAAACAAAAAACAGAAAATCCAATATTTGCCAGGAATGTGGCGCTGAGTTCAGGAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTTGAGGAACAAATCCTTAAATATAATAAAATAATTGGGCCTCGGTCACGCTACAGTAGTCTGAGAGGCCATATATCTGTTCCACACTTGAAAGAATGCCATGGAGGTGAAGCTCCTCCTGGAGAATGTCAGAAGCAGTTTGTTTGCCCCGAAGATGGATGTGGAAAAGTTTTCAGATATGCCTCTCAATTGCAAAAGCATGAGGATTCCCATGTCAAACTAGACTCAACAGAGGCATGTTGTACTGAACCGGGTTGCTCGAGAACATTTACCAACAAGCAATGCCTAAGGGCTCATATGCAGTCCTGCCACCAATACATCAAATGTGAGATTTGTGGGGAAAAAAAATTAAGAAAGAACTTGAAGCAACATCTACGACAGAAGCATGAAAGTGAAGGTCCACTGGAGGCAATTCCATGCAGGTATGAGGGCTGCAGCAAGGTTTTTTCAACAGCTTCAAATCTCCAGCAACACATGAAGGTTGTGCATATGGGACAAAAGCCGTTTGCATGTTGTTTCCCTGGTTGTGGCATGAGATTTGGGTATAAGCATGTGAGAGACAACCATGAGAAAAGTGGCCAGCATGTTTACACTAATGGGGATTTTGAAGCAGCTGATGAACACTTCCGCTCAAAACCAAGGGGAGGGAGAAAAAGAATCTGTCCAACTGTTGAAATGCTCATAAGGAAGAGGGTTACCCCCCCAAGTGAGTTTGATTTCACGATTGATGAAGAATGTTAG | 1308 | 44.5 | MNLWVPRAISIHPLSGQGGKTIVDRRDHSSISFSMRCLLNCLPLRGRPKYDMGQDPDLQPKSFANALVIPISMLMPKNFDFMWLIRRPDATSKLPAISEEEDSSRATAEISLPLLNSLLLFLPPSLTGTPAPPSLCSLSLRGIIRQMEIGKHNDDGDDKTKNRKSNICQECGAEFRKPAYLKQHMQSHSLEEQILKYNKIIGPRSRYSSLRGHISVPHLKECHGGEAPPGECQKQFVCPEDGCGKVFRYASQLQKHEDSHVKLDSTEACCTEPGCSRTFTNKQCLRAHMQSCHQYIKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCRYEGCSKVFSTASNLQQHMKVVHMGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTNGDFEAADEHFRSKPRGGRKRICPTVEMLIRKRVTPPSEFDFTIDEEC | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 40785222 | 40790993 | - | CePI673135_04g023200.1 | Cec04g2320 | 201802 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g2320 | 435 | SUPERFAMILY | beta-beta-alpha zinc fingers | 308 | 364 | IPR036236 | - | |
Cec04g2320 | 435 | PANTHER | ZINC FINGER PROTEIN | 156 | 428 | IPR051061 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0006357(PANTHER)|GO:0080084(PANTHER) | |
Cec04g2320 | 435 | SMART | c2h2final6 | 296 | 318 | IPR013087 | - | |
Cec04g2320 | 435 | SMART | c2h2final6 | 236 | 260 | IPR013087 | - | |
Cec04g2320 | 435 | SMART | c2h2final6 | 327 | 352 | IPR013087 | - | |
Cec04g2320 | 435 | SMART | c2h2final6 | 358 | 384 | IPR013087 | - | |
Cec04g2320 | 435 | SMART | c2h2final6 | 166 | 188 | IPR013087 | - | |
Cec04g2320 | 435 | SMART | c2h2final6 | 268 | 293 | IPR013087 | - | |
Cec04g2320 | 435 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 329 | 352 | IPR013087 | - | |
Cec04g2320 | 435 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 360 | 384 | IPR013087 | - | |
Cec04g2320 | 435 | Gene3D | Classic Zinc Finger | 324 | 400 | - | - | |
Cec04g2320 | 435 | Gene3D | Classic Zinc Finger | 224 | 296 | - | - | |
Cec04g2320 | 435 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 270 | 293 | IPR013087 | - | |
Cec04g2320 | 435 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 238 | 260 | IPR013087 | - | |
Cec04g2320 | 435 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 193 | IPR013087 | - | |
Cec04g2320 | 435 | Pfam | Zinc finger, C2H2 type | 168 | 188 | IPR013087 | - | |
Cec04g2320 | 435 | Pfam | Zinc finger, C2H2 type | 236 | 260 | IPR013087 | - | |
Cec04g2320 | 435 | Pfam | Zinc finger, C2H2 type | 329 | 352 | IPR013087 | - | |
Cec04g2320 | 435 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 188 | IPR013087 | - | |
Cec04g2320 | 435 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 327 | 357 | IPR013087 | - | |
Cec04g2320 | 435 | Gene3D | Classic Zinc Finger | 167 | 189 | - | - | |
Cec04g2320 | 435 | SUPERFAMILY | beta-beta-alpha zinc fingers | 166 | 260 | IPR036236 | - | |
Cec04g2320 | 435 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 236 | 265 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g2320 | Cec-Chr4:40785222 | Cec05g2922 | Cec-Chr5:39375446 | 1.80E-140 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29458 | PF00096 | zf-C2H2 | 6.20E-05 | CL0361 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g2320 | K09191 | - | csv:101217595 | 496.893 |