Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec05g0011 | ATGGAAACTGGATCCCAAAGATCATCAGGGCGAGGGCAGGTTGTTCCCAATATCAATTATCAAGTTCAAGTGTCGTTCCATCTCTCAAATGCACCGCATGATCCCCAGCCCATCCAGGAAATGGGATTAGTGCAATTGGAAGAGCAGAGCCAGGTTTTGAGCTTCTTGGCACCAAATAACGCCGCCATGCCACCTGCCTTTACTAACCCTACTACTTCTGCTCACACCTCACACCTCCTGCCTCGACCTTCTTGGAGTTCACAACAGCAAGTGGGCGGAACAGTGGATCCGAAGGCCGGGAACGAGGAAAACTGCACGGGTAGTGCTAGTGACGGCAGCAATTCATGGTGGAGAAACACAAACCCAGATAAGAGTAAGGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTCCTCGACGATGGCTATAAGTGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGCTACTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAGGATTGCCGGATGGTGATAACCACCTACGAAGTCGAAGGGAATTTAGGGTTAGGCAACGCCAAATCCAGTTGCACCTATAAAATCCCTTTTACGCATCAACCCGCTTCAACTGCGGTCTCGGCGTCTCCCACTACACGGTTTGAAGAGAAGCATAGCTCAGCAGAACACGCCGGTCCACAAAAAATGGAGCAGAGCTTTATCATGATCAAGCCTGATGGAGTTCAGAGAGGCCTGGTTGGAGAGATCATCAGTAGGTTTGAGAAGAAGGGCTTTTCTCTAAGAGGTTTGAAACTCATGTCTGTGGATCGTGCTTTTGCTGAGAATCATTACTCTGATCTTGCTGGAAAGCCCTTTTTCAATGGATTGATTGAATACATAATTTCTGGCCCCGTCGTTGCAATGATCTGGGAGGGGAAACATGTTGTAGCAACTGGTAGGAAGATCATCGGAGCCACGAAGCCAGTAGATTCTGATGTGGGAACCATCCGTGGTGACTATGCAATTGATGTTGGCAGGAACATCATTCATGGAAGTGACTCGGTGGAGAGTGCAAGGAAGGAAATTGCTCTGTGGTTCCCTGAAGGTCCAGTTTCCTGGCAGAGCAACCTTCATTCCTGGATCTACGATGGCATGGTTGGTTGCATGCTGTTTTTGACACCTGAAATCTTGAAACCAAATGGTGCCTCACTAGTAATCCGCAGAGAAACGGTAGTTTATGAAAATGTGAGAGAGGAGACGGAATGGGATGATGGTTCTCTTGTCGCTCCGCGGGCAGCGGCCTAG | 1356 | 49.04 | METGSQRSSGRGQVVPNINYQVQVSFHLSNAPHDPQPIQEMGLVQLEEQSQVLSFLAPNNAAMPPAFTNPTTSAHTSHLLPRPSWSSQQQVGGTVDPKAGNEENCTGSASDGSNSWWRNTNPDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEVEGNLGLGNAKSSCTYKIPFTHQPASTAVSASPTTRFEEKHSSAEHAGPQKMEQSFIMIKPDGVQRGLVGEIISRFEKKGFSLRGLKLMSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKHVVATGRKIIGATKPVDSDVGTIRGDYAIDVGRNIIHGSDSVESARKEIALWFPEGPVSWQSNLHSWIYDGMVGCMLFLTPEILKPNGASLVIRRETVVYENVREETEWDDGSLVAPRAAA | 451 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 140102 | 146912 | + | CePI673135_05g000110.1 | Cec05g0011 | 201814 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec05g0011 | 451 | Gene3D | - | 252 | 401 | IPR036850 | - | |
| Cec05g0011 | 451 | SMART | ndk_5 | 253 | 390 | IPR034907 | - | |
| Cec05g0011 | 451 | SUPERFAMILY | Nucleoside diphosphate kinase, NDK | 253 | 399 | IPR036850 | - | |
| Cec05g0011 | 451 | MobiDBLite | consensus disorder prediction | 68 | 122 | - | - | |
| Cec05g0011 | 451 | FunFam | Nucleoside diphosphate kinase | 250 | 400 | - | - | |
| Cec05g0011 | 451 | PANTHER | NUCLEOSIDE DIPHOSPHATE KINASE | 243 | 399 | - | GO:0004550(PANTHER) | |
| Cec05g0011 | 451 | Hamap | Nucleoside diphosphate kinase [ndk]. | 253 | 388 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cec05g0011 | 451 | Pfam | WRKY DNA -binding domain | 150 | 202 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec05g0011 | 451 | Gene3D | WRKY domain | 136 | 201 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec05g0011 | 451 | ProSiteProfiles | WRKY domain profile. | 144 | 209 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec05g0011 | 451 | FunFam | WRKY transcription factor 57 | 135 | 207 | - | - | |
| Cec05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 320 | 337 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cec05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 256 | 278 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cec05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 364 | 383 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cec05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 341 | 357 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cec05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 300 | 319 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cec05g0011 | 451 | SMART | WRKY_cls | 149 | 205 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec05g0011 | 451 | ProSitePatterns | Nucleoside diphosphate kinases active site. | 364 | 372 | IPR023005 | - | |
| Cec05g0011 | 451 | CDD | NDPk_I | 254 | 383 | - | - | |
| Cec05g0011 | 451 | Pfam | Nucleoside diphosphate kinase | 254 | 385 | IPR034907 | - | |
| Cec05g0011 | 451 | SUPERFAMILY | WRKY DNA-binding domain | 141 | 201 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec03g0340 | Cec-Chr3:3806335 | Cec05g0011 | Cec-Chr5:140102 | 5.40E-51 | dispersed | |
| Cec04g1276 | Cec-Chr4:32367030 | Cec05g0011 | Cec-Chr5:140102 | 4.00E-31 | dispersed | |
| Cec05g0011 | Cec-Chr5:140102 | Cec07g1260 | Cec-Chr7:28107699 | 5.20E-45 | dispersed | |
| Cec05g0011 | Cec-Chr5:140102 | Cec02g0106 | Cec-Chr2:1104626 | 8.60E-32 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 29461 | PF00334 | NDK | 1.10E-51 | No_clan | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec05g0011 | K00940 | - | csv:101216931 | 301.597 |