Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0021 ATGGGCAAGAAGGGAGGATCCTCGTGGTTGACGGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGATGAAGACCACAAGAAAACAGAGAAGCGGAGATGGGTTTTCAGGCGATCCACCAATCCACACCACCCGCCCTCCAACCCATCCTCCCAGGCGGTGGTCACTGCCGAAGCTGCAAAGGCCACCGCCCAAGCGGCTGTAGAGGTTGCTCGCCTCACCACCAAGCCTTCCAATCACGCCAGAGACCACTACGCTGCAATTCTCATTCAGACTATTTTTAGAGGTTACCTGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTGGTGAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTCAGGAAACAGGCTAAAATGACACTTCGATGCATGCAAGCTCTGGTTCGAGTGCAGGCCCGTGTGCTCGATGAGCGGATGCGGCTCTCTCATGAAGGCACTAGAAATTCCACACTCAGCGATCCCAGTACCGCCCTTGGATCGCGTTACCTTCAATACTTGTCTGACAGAAAAGAGTTTGCTATGAAGCGTGATAGAAATCTCTCCCAGCAGATATGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGATCTGGAAGAAAGACCCAAGTGGTTGGATCAATGGAATTCACGGAAGCCATGGGAAAGCAGGGGAAGAGCATCAACCGATCAAAGAGATCCGATCAAAACAGTGGAAATCGACACCTTCCAACCCTACACTCGCACATCCTCTAACTTCCGAAGAATGGCTCAAAGTCAACAAAGAACAAACCCGCATTCGGGCAGTTCGCCACTCCACCGGACGCAACAAAACGTACCCTCTTTCTACCACTCACCGGCCACACCCTCCCCGTCTAAAACCAGGCCTATACTGCAAGTCCGGTCTGCAAGCCCGCGTTTCGTGAGAGAGGACAAAAGCGAGAATACATCCCAAACACCCAGCTTAAGGTCAAACTACTACTACGGTGGAAATTTGGTCCAACAACAAGAAGGCAGGAGTGGAGCGAGTGGCAGTTACGGCGGTGAAGGCAATTGTTTGCCCAATTACATGGCAGCGACGGAGTCTGCCAAGGCCCGACTACGGTCGCAGAGCGCGCCGAGGCAAAGGGCGTCGACGCCGGAGAGGGAGAGGGAGAAGGGAGTTGGGTGTGCAAAGAAACGGCTGTCATTCCCAGTTGCTGATCCAATTGGGCATGGAGTTTTGAGGAGCCCAAGCTTCAAGAGCGTGAGCGGGACGTACTTGGGACTGGAGCAGCAGTCTAACTATTCTTCCTGCTGTACTGAGAGCCTGGGAGGTGAGATTTCCCCCTCTTCAACCACTGATCTAAGAAGGTGGCTAAGTCCTCCGGAGGATCCCATCAAATGCGAATCCGTATCCCCAAATAAGCACGCCAATTGCACCATCACAAATTCCTACGCCACGTTTCCGGACCGAACCATCTGCCGTGCGGCGGAGGTGGTATACCCAACCACAGAGGCGGAGGTTATGTTGGCGGTGGCAGCGGCGACCAGAGGTATGAGGAAAATGAAGGTGGGGACTCGGTTCTCTCACAGCATCCCCAAGCTGGCGTGTCCGGAGGGGGAAGATGGGGTGGTGATAAGCACCAAGTACCTGAACCGGACTGTGAAGGTGGACGTGGAGGGGATGAGCATAAGCGTGGAGGGGGGAGCCACTCTGAGGCAGATCATAGACGACGCTGCCGCGGCTGGTCTTGCTCTGCCCCATACGCCTTACTGGTGGGGCCTCACCATTGGCGGCCTCCTAAGCACCGGGGCTCATGGCAGCTCCTTATGGGGCAAAGGCAGCGCAGTCCACGATTACGTTTCGGCCATTCAAATCGTCACTCCCGGTGGGCCCCAAGATGGCTACGCCAAACTCCGCACCCTTCTTCATCCGCCTCACCAACACCATCTCAACGCTGCCAAAGTTTCTTTGGGAGTTCTTGGAATTATTACACAGGTAACTCTAAAATTGGAACCAATGTTCAAGCGATCTATCACTTATTTGAAAATGGATGATATGGATTTGGGGGAAGAAGTGGTGAGGTTTGGGAGAAGTTATGAATTTGGAGACATGACTTGGTATCCAAGCCAACGTAAAGTTGTGTATCGTAAGGATGCCCGCGTTTCCTCCAATACCTCCGGCAATGGCCTCTATGACTTTATCCCATTCCGCCCCACGCCTTCATTAGACTTGGCACTTGTTCGAGCCTCAGAGGAGCACCAAGAATCAAGGCGTGACGCAGCTGCCAAGTGTTCTAGTGCAAACCTAATTACGTCCACTCTTTCACTCTTGGCTTACGGATTAACCAACAATGGCATCTCGTTTCTTAAATACCCTGTGATCGGGTATAACAATCGACTTCAGTCCTCCGGGAGTTGCCTAGACAGCCACAAGGAGTTTAGAATAACCACATGCCCTTGGGACCCCTTGATCAAAGGAGAGTTCTTCCACCAAACCGCCATTAGCATTGACTTGAAAGTGGTGAAAAGTTTCATCCAAGACATCCAGAAACTTGCCGAGTTGGAGCCCATGGCATTCTGTGGTCTCGAGCTCTACAATGGCATCCTCATGCGCTACGTCACAGCCTCCACCGCTTACTTGGGGAAGCAGGAAGATGGGGTTGACTTTGACTTCACATATTACAGAAGCAGAGACCCAATGAGTCCTAGGCTTTTCGAGGATGTTGTAGAAGAGGTAGAGCAAATGGCAGTGTTCAAATATGGAGGCCTTCCGCATTGGGGAAAGAATCGGAACGTAGCATTTAATCAAGCATTTCGCAAATACAGAAATAGAGAAAGCTTTCTGAAGGTTATGAGGGAATATGATCCCCATGGGCTTTTCTCAAATGAGTGGACAGATCAAATTCTTGGACTGAAAGGAAGAGTGAACATATACAAAGATGGGTGCGCCTTGGAAGGACTTTGCATATGCTCTCAACACAGTCATTGTGCCCCAAGCAAGGGCTACTTTTGTAGGGGTGGCACAATTTACAAGGAAGCTAGGGTGGGGGAGATGAGGAGTGAGGAGAGGGTTAATAAAGAATATGGAGCAGCTTCTAAAATGGCAATGAAAGCGGCTGCTGTATTGGTTGTTTTGGTAGCGGTGCGGGCGGTTTATGGAGCAGATATCATCGTTGGCGGCAACTCTGGGTGGAACCAGGGGGTGAACTACGACACCTGGGCTGCAGGACAGACTTTTAGGGTTGGCGACACATTAGTGGACGAGGTGAATGAAGAAAGCTACAAGGCATGCTCCTCCACCTCGGTGATCAAGTCCCACACAGGCGGAACAACACCCATTCCACTGTCAACGGCAGGGCCTAGGTACTTCATCTGTCCCACTCCCGGCCACTGTGCCTCCGGCATGAAGCTTCAAGTCAATGTTCTGGCGGCCAACTCCACCCCAAACCCAACCCCAACCCCAACCCCACCGGCCACAGCCAATCCACCGCCTCCATCTCCAAGCGCAGCAGCCCCCTCTGCTTTGTTCACTCTCAACCATTTCATCTTCGGGGCTTCCGTTGCCACCCTGTTTGCCAGAGGCTACGGTAGAGGAACAAGGTCGAAGGCGGTTACCATGTCGGCGGAGGATTTGGAGAACGGAGAGTTTTACTTGAGATATTATGTGGGGCACAAAGGGAAATTTGGACACGAATTCTTGGAGTTTGAATTCCGACCCGATGGCAAGCTTCGCTATGCTAACAACTCCAACTACAAGAACGACACCATGATTCGCAAGGAAGTCTACCTCACCCCTGCTGTCCTTCGGGAATGCCGTCGAATCATCTCCGATAGCGAGTTTTACACTGTCCCAACTCGTGATCGTGCTCAAGCTGGGATAAAGGCTACCTTCACAATTTCAAGTAACCCTCATAATGGTTCGAGGGACAGAGGGTATTTCCTTCATTATTTCCAAAAACTGGGGCAAATAACATCAATCCTCCCAAATCAGATTATGAAGGAAGACGACAATAATTGGCCAGAACCTGATCGGGTTGGACGACAGGAGCTTGAGATTGTGATGGGGAATGAGCATATCTCCTTCACTACGTCTAAGATTGGATCTCTTGTTGATGTGCAGAGCAGCAAGGATCCTGAAGGATTGCGGATATTCTATTATCTTGTTCAGGATCTGAAATGCTTTGTATTTTCTCTCATTTCACTCCACTTCAAGATCAAGCCAATTTAA 4218 51.38 MGKKGGSSWLTAVKRAFRSPSKDEDHKKTEKRRWVFRRSTNPHHPPSNPSSQAVVTAEAAKATAQAAVEVARLTTKPSNHARDHYAAILIQTIFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDERMRLSHEGTRNSTLSDPSTALGSRYLQYLSDRKEFAMKRDRNLSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRKPWESRGRASTDQRDPIKTVEIDTFQPYTRTSSNFRRMAQSQQRTNPHSGSSPLHRTQQNVPSFYHSPATPSPSKTRPILQVRSASPRFVREDKSENTSQTPSLRSNYYYGGNLVQQQEGRSGASGSYGGEGNCLPNYMAATESAKARLRSQSAPRQRASTPEREREKGVGCAKKRLSFPVADPIGHGVLRSPSFKSVSGTYLGLEQQSNYSSCCTESLGGEISPSSTTDLRRWLSPPEDPIKCESVSPNKHANCTITNSYATFPDRTICRAAEVVYPTTEAEVMLAVAAATRGMRKMKVGTRFSHSIPKLACPEGEDGVVISTKYLNRTVKVDVEGMSISVEGGATLRQIIDDAAAAGLALPHTPYWWGLTIGGLLSTGAHGSSLWGKGSAVHDYVSAIQIVTPGGPQDGYAKLRTLLHPPHQHHLNAAKVSLGVLGIITQVTLKLEPMFKRSITYLKMDDMDLGEEVVRFGRSYEFGDMTWYPSQRKVVYRKDARVSSNTSGNGLYDFIPFRPTPSLDLALVRASEEHQESRRDAAAKCSSANLITSTLSLLAYGLTNNGISFLKYPVIGYNNRLQSSGSCLDSHKEFRITTCPWDPLIKGEFFHQTAISIDLKVVKSFIQDIQKLAELEPMAFCGLELYNGILMRYVTASTAYLGKQEDGVDFDFTYYRSRDPMSPRLFEDVVEEVEQMAVFKYGGLPHWGKNRNVAFNQAFRKYRNRESFLKVMREYDPHGLFSNEWTDQILGLKGRVNIYKDGCALEGLCICSQHSHCAPSKGYFCRGGTIYKEARVGEMRSEERVNKEYGAASKMAMKAAAVLVVLVAVRAVYGADIIVGGNSGWNQGVNYDTWAAGQTFRVGDTLVDEVNEESYKACSSTSVIKSHTGGTTPIPLSTAGPRYFICPTPGHCASGMKLQVNVLAANSTPNPTPTPTPPATANPPPPSPSAAAPSALFTLNHFIFGASVATLFARGYGRGTRSKAVTMSAEDLENGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVYLTPAVLRECRRIISDSEFYTVPTRDRAQAGIKATFTISSNPHNGSRDRGYFLHYFQKLGQITSILPNQIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 1405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 246665 263245 - CePI673135_05g000210.1 Cec05g0021 201824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0021 1405 Pfam IQ calmodulin-binding motif 86 104 IPR000048 GO:0005515(InterPro)
Cec05g0021 1405 Pfam IQ calmodulin-binding motif 110 126 IPR000048 GO:0005515(InterPro)
Cec05g0021 1405 SUPERFAMILY FAD-binding/transporter-associated domain-like 479 669 IPR036318 GO:0050660(InterPro)
Cec05g0021 1405 NCBIfam FAD-dependent oxidoreductase 457 1012 IPR010030 -
Cec05g0021 1405 ProSiteProfiles IQ motif profile. 83 111 - -
Cec05g0021 1405 Pfam Plastocyanin-like domain 1061 1132 IPR003245 GO:0009055(InterPro)
Cec05g0021 1405 ProSitePatterns Type-1 copper (blue) proteins signature. 1116 1132 IPR028871 -
Cec05g0021 1405 Pfam D-arabinono-1,4-lactone oxidase 826 964 IPR007173 GO:0003885(InterPro)|GO:0016020(InterPro)
Cec05g0021 1405 SUPERFAMILY Mago nashi protein 1211 1278 IPR036605 GO:0005634(InterPro)
Cec05g0021 1405 Pfam Protein of unknown function (DUF4005) 306 412 IPR025064 -
Cec05g0021 1405 FunFam IQ-domain 11 82 133 - -
Cec05g0021 1405 ProSiteProfiles PCMH-type FAD-binding domain profile. 488 670 IPR016166 GO:0071949(InterPro)
Cec05g0021 1405 CDD Phytocyanin 1051 1138 - -
Cec05g0021 1405 Gene3D Mago nashi 1208 1405 IPR036605 GO:0005634(InterPro)
Cec05g0021 1405 MobiDBLite consensus disorder prediction 17 31 - -
Cec05g0021 1405 Pfam L-gulonolactone oxidase 2-like, C-terminal domain 976 1012 - -
Cec05g0021 1405 MobiDBLite consensus disorder prediction 1141 1166 - -
Cec05g0021 1405 Pfam FAD binding domain 494 627 IPR006094 GO:0050660(InterPro)
Cec05g0021 1405 Pfam Mago nashi protein 1213 1278 IPR004023 GO:0008380(InterPro)|GO:0035145(InterPro)
Cec05g0021 1405 Pfam Mago nashi protein 1324 1405 IPR004023 GO:0008380(InterPro)|GO:0035145(InterPro)
Cec05g0021 1405 Gene3D - 548 669 IPR016169 -
Cec05g0021 1405 MobiDBLite consensus disorder prediction 191 328 - -
Cec05g0021 1405 SUPERFAMILY Mago nashi protein 1323 1405 IPR036605 GO:0005634(InterPro)
Cec05g0021 1405 ProSiteProfiles IQ motif profile. 107 134 - -
Cec05g0021 1405 ProSiteProfiles Phytocyanin domain profile. 1051 1140 IPR003245 GO:0009055(InterPro)
Cec05g0021 1405 SUPERFAMILY Cupredoxins 1050 1139 IPR008972 -
Cec05g0021 1405 MobiDBLite consensus disorder prediction 1146 1166 - -
Cec05g0021 1405 FunFam L-gulonolactone oxidase 5 549 669 - -
Cec05g0021 1405 Gene3D - 82 136 - -
Cec05g0021 1405 MobiDBLite consensus disorder prediction 1 52 - -
Cec05g0021 1405 MobiDBLite consensus disorder prediction 364 391 - -
Cec05g0021 1405 MobiDBLite consensus disorder prediction 244 301 - -
Cec05g0021 1405 MobiDBLite consensus disorder prediction 201 239 - -
Cec05g0021 1405 PANTHER GULONOLACTONE OXIDASE 468 1011 IPR050432 GO:0016491(PANTHER)
Cec05g0021 1405 SMART iq_5 105 126 IPR000048 GO:0005515(InterPro)
Cec05g0021 1405 SMART iq_5 82 104 IPR000048 GO:0005515(InterPro)
Cec05g0021 1405 Gene3D - 1050 1144 IPR008972 -
Cec05g0021 1405 CDD Mago_nashi 1212 1405 IPR004023 GO:0008380(InterPro)|GO:0035145(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0021 K00103 - - csv:101221035 988.023
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1727 Cec-Chr2:35039068 Cec05g0021 Cec-Chr5:246665 5.80E-12 dispersed
Cec05g0021 Cec-Chr5:246665 Cec06g0277 Cec-Chr6:3116200 1.90E-117 dispersed
Cec05g0021 Cec-Chr5:246665 Cec04g1024 Cec-Chr4:29828467 3.20E-24 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g2145 . 1 473 IQD Protein Family AT3G52290 54.7 6.1e-104 374.8
Cec05g2305 . 1779 1988 IQD Protein Family AT2G26410 50.2 2.8e-42 170.2
Cec03g1235 . 50 457 IQD Protein Family AT3G22190 57.8 1.4e-97 353.6
Cec05g1978 . 1 438 IQD Protein Family AT2G26180 62.0 1.8e-121 433.0
Cec04g2056 . 49 322 IQD Protein Family AT2G33990 52.1 7.2e-63 237.7
Cec07g1090 . 133 316 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cec04g2056 . 49 270 IQD Protein Family AT3G15050 50.5 5.4e-55 211.5
Cec07g1090 . 136 309 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cec01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 1.6e-75 280.4
Cec06g0277 . 1 508 IQD Protein Family AT4G00820 50.9 2.1e-114 409.8
Cec05g0021 . 1 455 IQD Protein Family AT4G00820 50.5 1.3e-103 374.0
Cec06g0277 . 1 508 IQD Protein Family AT1G01110 50.2 3.2e-110 396.0
Cec09g0022 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
Cec03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 6.6e-65 245.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005085 3 1 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 6 1 1 1 1 1 0 1 2 40