Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0032 ATGATACATTTCCTTTTCTTTGCCGCCCTTCTCTCTCTTTCACTTACCCCTTCCAGCTTTTGCTTCCATCCCAAATCCTTCAATCTCTCTAACTACCACTCCTATGACTCTGATTGGTCTCCGGCCGTCGCCACCTGGTACGGTCCTCCTAATGGTGCCGGGAGCGATGGAGGTTCGTGTGGATATGGAGAGGCGGTGGAGCAACCACCATTTTCGTCGTTAGTTACGGCGGGAGGCCCTTCTTTGTACAAATCTGGCAAAGCCTGTGGAGCTTGCTATCAGGTGAAGTGCTCCGGAGAAGTCGCGTGCTCAGGGAATCCAGTGACGGTGGTTATAACCGATAGTTGTCCCGGTGGCTCCTGTGCTTCTGACTCCGTCCACTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCAACTGGCCGGGCTGATGAACTCCGCAGTCTCGGCGTTTTGCACATTCAACATAAAAGGGTGCAATGCAATTATCCGAGAACGTCAATCAGTTTCATCGTGGACTCGGGGTCGAACTCGAACTATTTCGCAGCTCTGATCGAATATGAAGATGGAGATGGGGAACTTGGTTCAGTGGAGCTGAAACAGGCGGACTCGTACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTTGACTCCGGCTCAGCCCTTCAAGCTCCCTTCTCCCTCAGGCTCACCGCCCTGGACTCCGGCAAGATCGTGGTCGCAAACAACGTAATTCCCGTTGGGTGGCAGCCAGGGATGACTTATAGATCAGCGGTCAACTTCGATACTTAA 807 52.79 MIHFLFFAALLSLSLTPSSFCFHPKSFNLSNYHSYDSDWSPAVATWYGPPNGAGSDGGSCGYGEAVEQPPFSSLVTAGGPSLYKSGKACGACYQVKCSGEVACSGNPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGRADELRSLGVLHIQHKRVQCNYPRTSISFIVDSGSNSNYFAALIEYEDGDGELGSVELKQADSYSWIPMKQSWGAVWKLDSGSALQAPFSLRLTALDSGKIVVANNVIPVGWQPGMTYRSAVNFDT 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 402533 403535 - CePI673135_05g000320.1 Cec05g0032 201835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0032 268 SMART dpbb_1 75 157 IPR007112 -
Cec05g0032 268 SUPERFAMILY PHL pollen allergen 168 262 IPR036749 -
Cec05g0032 268 Gene3D - 25 163 IPR036908 -
Cec05g0032 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 262 IPR007117 -
Cec05g0032 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 167 IPR007112 -
Cec05g0032 268 Pfam Lytic transglycolase 76 141 IPR009009 -
Cec05g0032 268 Gene3D - 166 267 IPR036749 -
Cec05g0032 268 PRINTS Major pollen allergen Lol pI signature 77 88 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec05g0032 268 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec05g0032 268 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec05g0032 268 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec05g0032 268 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec05g0032 268 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec05g0032 268 PANTHER EXPANSIN-B3 12 266 - -
Cec05g0032 268 CDD DPBB_EXPB_N 39 162 - -
Cec05g0032 268 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Cec05g0032 268 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576(InterPro)
Cec05g0032 268 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Cec05g0032 268 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Cec05g0032 268 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Cec05g0032 268 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576(InterPro)
Cec05g0032 268 SUPERFAMILY Barwin-like endoglucanases 38 187 IPR036908 -
Cec05g0032 268 Pfam Expansin C-terminal domain 169 251 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1833 Cec-Chr2:36143545 Cec05g0032 Cec-Chr5:402533 6.60E-64 dispersed
Cec05g0032 Cec-Chr5:402533 Cec07g0341 Cec-Chr7:3296277 1.70E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0032 - - - 0.0