Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0047 ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCACAGGCCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCAGGAGACGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGGGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTACTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTACATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTTGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTAGTGTGCAGCGCCCCTCAATGGCCATTAACCCGTGGGCAGTGTTACCAATCCAACGTTGA 906 52.76 MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRPLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAEAEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSLASAATTTRHPAAASVQRPSMAINPWAVLPIQR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 542726 544765 + CePI673135_05g000470.1 Cec05g0047 201850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0047 301 FunFam Homeobox-leucine zipper protein 18 133 209 - -
Cec05g0047 301 Coils Coil 106 126 - -
Cec05g0047 301 MobiDBLite consensus disorder prediction 71 149 - -
Cec05g0047 301 Coils Coil 210 240 - -
Cec05g0047 301 MobiDBLite consensus disorder prediction 105 119 - -
Cec05g0047 301 SMART halz 204 247 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g0047 301 SMART HOX_1 146 208 IPR001356 GO:0003677(InterPro)
Cec05g0047 301 Gene3D - 141 209 - -
Cec05g0047 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 281 IPR050762 -
Cec05g0047 301 MobiDBLite consensus disorder prediction 80 96 - -
Cec05g0047 301 Pfam Homeodomain 148 202 IPR001356 GO:0003677(InterPro)
Cec05g0047 301 Pfam HD-ZIP protein N terminus 1 101 IPR006712 GO:0005634(InterPro)
Cec05g0047 301 CDD homeodomain 148 205 IPR001356 GO:0003677(InterPro)
Cec05g0047 301 ProSiteProfiles 'Homeobox' domain profile. 144 204 IPR001356 GO:0003677(InterPro)
Cec05g0047 301 Pfam Homeobox associated leucine zipper 204 238 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g0047 301 ProSitePatterns 'Homeobox' domain signature. 179 202 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec05g0047 301 MobiDBLite consensus disorder prediction 120 149 - -
Cec05g0047 301 SUPERFAMILY Homeodomain-like 134 205 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0047 Cec-Chr5:542726 Cec10g0249 Cec-Chr10:2766106 2.10E-71 dispersed
Cec05g0047 Cec-Chr5:542726 Cec09g0378 Cec-Chr9:3241315 2.80E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29469 PF04618 HD-ZIP_N 4.10E-31 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0047 K09338 - csv:101222132 450.669