Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g0047 | ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCACAGGCCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCAGGAGACGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGGGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTACTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTACATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTTGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTAGTGTGCAGCGCCCCTCAATGGCCATTAACCCGTGGGCAGTGTTACCAATCCAACGTTGA | 906 | 52.76 | MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRPLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAEAEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSLASAATTTRHPAAASVQRPSMAINPWAVLPIQR | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 542726 | 544765 | + | CePI673135_05g000470.1 | Cec05g0047 | 201850 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g0047 | 301 | FunFam | Homeobox-leucine zipper protein 18 | 133 | 209 | - | - | |
Cec05g0047 | 301 | Coils | Coil | 106 | 126 | - | - | |
Cec05g0047 | 301 | MobiDBLite | consensus disorder prediction | 71 | 149 | - | - | |
Cec05g0047 | 301 | Coils | Coil | 210 | 240 | - | - | |
Cec05g0047 | 301 | MobiDBLite | consensus disorder prediction | 105 | 119 | - | - | |
Cec05g0047 | 301 | SMART | halz | 204 | 247 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g0047 | 301 | SMART | HOX_1 | 146 | 208 | IPR001356 | GO:0003677(InterPro) | |
Cec05g0047 | 301 | Gene3D | - | 141 | 209 | - | - | |
Cec05g0047 | 301 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 7 | 281 | IPR050762 | - | |
Cec05g0047 | 301 | MobiDBLite | consensus disorder prediction | 80 | 96 | - | - | |
Cec05g0047 | 301 | Pfam | Homeodomain | 148 | 202 | IPR001356 | GO:0003677(InterPro) | |
Cec05g0047 | 301 | Pfam | HD-ZIP protein N terminus | 1 | 101 | IPR006712 | GO:0005634(InterPro) | |
Cec05g0047 | 301 | CDD | homeodomain | 148 | 205 | IPR001356 | GO:0003677(InterPro) | |
Cec05g0047 | 301 | ProSiteProfiles | 'Homeobox' domain profile. | 144 | 204 | IPR001356 | GO:0003677(InterPro) | |
Cec05g0047 | 301 | Pfam | Homeobox associated leucine zipper | 204 | 238 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g0047 | 301 | ProSitePatterns | 'Homeobox' domain signature. | 179 | 202 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cec05g0047 | 301 | MobiDBLite | consensus disorder prediction | 120 | 149 | - | - | |
Cec05g0047 | 301 | SUPERFAMILY | Homeodomain-like | 134 | 205 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g0047 | Cec-Chr5:542726 | Cec10g0249 | Cec-Chr10:2766106 | 2.10E-71 | dispersed | |
Cec05g0047 | Cec-Chr5:542726 | Cec09g0378 | Cec-Chr9:3241315 | 2.80E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29469 | PF04618 | HD-ZIP_N | 4.10E-31 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g0047 | K09338 | - | csv:101222132 | 450.669 |