Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0056 ATGAACGGCAAAACTCCGGCCACGAGGACTCGTGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGAACTTTTGCTAAGGTCAAGTTCGCGAAGAACGTTGAGAATGGTGATTATGTCGCCATTAAGATTCTCGATCGTGAAAAAGTTCTTCGCCACAGGATGGTCGAACAGATCAAAAGGGAGATTTCGACTCTGAAAGTGATCAAGCATCCGAATGTTTGTAAGATTTATGAGGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAGATAGCCGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCAGCAACTTATAAATGCTGTAGATTACTGCCATAGTAGAGGCGTCTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTGCGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACACCAAACTACGTAGCTCCTGAGGTCTTCAATGATAAAGGTTATGATGGTACATCATCAGATATTTGGTCATGCGGGGTTATTCTCTTTGTTCTTATGGCGGGCTTCTTGCCTTTTGACGAGCCAAATCTAATGTGTTTGTACAGAAAAATTTCAAATGCTGATTTTTCCTTTCCATCATGGTTCTCAAGTGGTGCAAGAAAACTAGTTTGCCGCATTCTTGATCCAGACCCTATTAATCGAATAACAATAGCCGAAATTCAAGAAGATCCATGGTTCAAGAAGGGCTACACACCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTAGATGCCGCTTTTAGCAGCTCAAAGGAACATCTTGTGACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCTTTCGAGCTTATCTCTAGGTCACCTGGTTTTAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCGTTTTACTTCGCAAAGCCCTGCAAACGAGATCATGTCGAAGATTGAGGAAACTGCAAAACCAATGGGGTTCAATGTACGAAAACGGGACTACAAGATGAAGTTGCAAGGTGACAAAACTGGGAGGAAAGGACACCTCTCCATAGCCACTGAGGTGTTTGAGGTGGCTCCTTCATTGCATATGGTCGAGCTTCGGAAAACAGGGGGCGATACGCTCGAGTTTCATAAGGCATGTCATCAGTATTCTTAG 1272 43.71 MNGKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKVLRHRMVEQIKREISTLKVIKHPNVCKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMCLYRKISNADFSFPSWFSSGARKLVCRILDPDPINRITIAEIQEDPWFKKGYTPAHFEVEEDITLDDVDAAFSSSKEHLVTERKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKACHQYS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 603829 608526 - CePI673135_05g000560.1 Cec05g0056 201859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0056 423 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Cec05g0056 423 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cec05g0056 423 CDD STKc_SnRK3 14 269 - -
Cec05g0056 423 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Cec05g0056 423 FunFam Non-specific serine/threonine protein kinase 306 423 - -
Cec05g0056 423 SUPERFAMILY Protein kinase-like (PK-like) 12 298 IPR011009 -
Cec05g0056 423 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Cec05g0056 423 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g0056 423 Gene3D Kinase associated domain 1, KA1 306 423 - -
Cec05g0056 423 FunFam Non-specific serine/threonine protein kinase 8 310 - -
Cec05g0056 423 CDD CIPK_C 313 419 - -
Cec05g0056 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g0056 423 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cec05g0056 423 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Cec05g0056 423 Pfam NAF domain 309 369 IPR004041 GO:0007165(InterPro)
Cec05g0056 423 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g0056 423 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2187 Cec-Chr4:39634959 Cec05g0056 Cec-Chr5:603829 2.50E-170 dispersed
Cec05g0056 Cec-Chr5:603829 Cec06g1289 Cec-Chr6:26120882 2.50E-134 dispersed
Cec05g0056 Cec-Chr5:603829 Cec03g0761 Cec-Chr3:8350328 2.20E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71965 PF00069 Pkinase 1.10E-71 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0056 - - - 0.0