Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0089 ATGGTTAACGGGATTGCTCGTAGAATAAGGAGGAGCGGCAGCGAAGAAAAGAAATCCATTTCCCATTTGTCTCGCCTTTCTCGTTTTCGCTGTCGCTTTCCTGGGAATGTTTATAGCCTTCCAGAGATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGACAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGGCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAACAAGCTGTCGGATCTGGTAGAGAGACCAAACGCTTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGGGATCCTAGGGATGGAGAGGAAACAGAATCTACACAGGTTCTTAGTCTCCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTAGACAGACTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCTGGGAAACATACCTGGCTTTCAGATGTGCTCAATTTGCCATCTGAATATTGTGTGAGATCATACCTGGCGAAATCTGCGGGAATTCGGACGATTGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTTAGATCCGTGAATGAGAGCTTAGAGTTAGTGCAGCTGATCAGATCATTGTTTTCATCCCAACTTTCACTCGACAGAGTTAGGTCATCAGCGGCGATGTCAATGATGGCTGAAAGAAAAGATGAAAGCACCCCATTTGCAAGTTTGGGAATTGCAGAAAGAGGAGAAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCCAATGGAGGTAGAATACAGTTTCAAAGCCCTCGAAATGGCATTCACAGTCCGAATTTGGCACATGTTCATGGTCTCAAGCAGGGGAATCCTGCAGAAATTTATGGCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCAGCTAGTTAATGGAGTCAGAGATGAATTTTGTCTCAATCCATATCAATCACAAAAGCTGGCGCAAATGCAAATTGATTTCTCAGCAGCAACATCAAGGCCTTCTGTGATTAACCGTGTAATAGCAGATACGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACTGACGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGTAGGGAGGAACCACTAAATCATGTTGAGGCAGAGAGGCAGCGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGACAAAGCTTCACTGCTGGGAGATGCCATTGCTTACATAAACGAGCTTCAAGAAAAAGTGAAGGCCATGGAATTTGAACGTGAGAAATCCGGCCTCACCTCAAGTGATGCAACCCCTTCGGAGGGGAACCCAGAAATTGAAAATAAAGAACAATTCCTTGATGTCGACATTGAGGTCGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCTAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCCGAGCAGTTGACGAAGGAACTGTTCATAGCTGCATTTTCCCGGGACTCCAGTTCGTTAGTATGTAGTGAGAAGAGCCCAACTGAAAGCTTCTTCAGAAGTTTTGATTTACAACAGGGTTTGGTGAGAAAGGAAGAGCCTATTAACAACCATCCATTTGTAACTTGTGGTTAG 2073 45.39 MVNGIARRIRRSGSEEKKSISHLSRLSRFRCRFPGNVYSLPEMKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMACSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETESTQVLSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRLTDTEMFFLASMYFSFPRGEGGPGKCLASGKHTWLSDVLNLPSEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMMAERKDESTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIHSPNLAHVHGLKQGNPAEIYGSPTPPVNNNHEQQLVNGVRDEFCLNPYQSQKLAQMQIDFSAATSRPSVINRVIADTEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKAMEFEREKSGLTSSDATPSEGNPEIENKEQFLDVDIEVEAAHDEVIVKVSCPLESHPASRVIKAMKDAQINVVDSKLSEANDKVLHTFVIKSPGSEQLTKELFIAAFSRDSSSLVCSEKSPTESFFRSFDLQQGLVRKEEPINNHPFVTCG 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 847125 850281 + CePI673135_05g000890.1 Cec05g0089 201892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0089 690 Gene3D - 478 549 IPR036638 GO:0046983(InterPro)
Cec05g0089 690 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 485 534 IPR011598 GO:0046983(InterPro)
Cec05g0089 690 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 488 546 IPR036638 GO:0046983(InterPro)
Cec05g0089 690 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 94 282 IPR025610 -
Cec05g0089 690 CDD bHLH_AtAIB_like 482 555 - -
Cec05g0089 690 FunFam Transcription factor bHLH13 478 551 - -
Cec05g0089 690 MobiDBLite consensus disorder prediction 545 565 - -
Cec05g0089 690 MobiDBLite consensus disorder prediction 451 496 - -
Cec05g0089 690 PANTHER MYC 81 648 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Cec05g0089 690 MobiDBLite consensus disorder prediction 450 496 - -
Cec05g0089 690 Pfam Helix-loop-helix DNA-binding domain 489 535 IPR011598 GO:0046983(InterPro)
Cec05g0089 690 SMART finulus 491 540 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1500 Cec-Chr4:34530335 Cec05g0089 Cec-Chr5:847125 6.30E-12 dispersed
Cec05g0089 Cec-Chr5:847125 Cec07g0109 Cec-Chr7:1156948 2.20E-71 dispersed
Cec05g0089 Cec-Chr5:847125 Cec10g0170 Cec-Chr10:1673160 8.40E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29472 PF14215 bHLH-MYC_N 4.40E-54 CL0161 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0089 - - - 0.0