Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g0089 | ATGGTTAACGGGATTGCTCGTAGAATAAGGAGGAGCGGCAGCGAAGAAAAGAAATCCATTTCCCATTTGTCTCGCCTTTCTCGTTTTCGCTGTCGCTTTCCTGGGAATGTTTATAGCCTTCCAGAGATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGACAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGGCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAACAAGCTGTCGGATCTGGTAGAGAGACCAAACGCTTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGGGATCCTAGGGATGGAGAGGAAACAGAATCTACACAGGTTCTTAGTCTCCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTAGACAGACTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCTGGGAAACATACCTGGCTTTCAGATGTGCTCAATTTGCCATCTGAATATTGTGTGAGATCATACCTGGCGAAATCTGCGGGAATTCGGACGATTGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTTAGATCCGTGAATGAGAGCTTAGAGTTAGTGCAGCTGATCAGATCATTGTTTTCATCCCAACTTTCACTCGACAGAGTTAGGTCATCAGCGGCGATGTCAATGATGGCTGAAAGAAAAGATGAAAGCACCCCATTTGCAAGTTTGGGAATTGCAGAAAGAGGAGAAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCCAATGGAGGTAGAATACAGTTTCAAAGCCCTCGAAATGGCATTCACAGTCCGAATTTGGCACATGTTCATGGTCTCAAGCAGGGGAATCCTGCAGAAATTTATGGCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCAGCTAGTTAATGGAGTCAGAGATGAATTTTGTCTCAATCCATATCAATCACAAAAGCTGGCGCAAATGCAAATTGATTTCTCAGCAGCAACATCAAGGCCTTCTGTGATTAACCGTGTAATAGCAGATACGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACTGACGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGTAGGGAGGAACCACTAAATCATGTTGAGGCAGAGAGGCAGCGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGACAAAGCTTCACTGCTGGGAGATGCCATTGCTTACATAAACGAGCTTCAAGAAAAAGTGAAGGCCATGGAATTTGAACGTGAGAAATCCGGCCTCACCTCAAGTGATGCAACCCCTTCGGAGGGGAACCCAGAAATTGAAAATAAAGAACAATTCCTTGATGTCGACATTGAGGTCGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCTAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCCGAGCAGTTGACGAAGGAACTGTTCATAGCTGCATTTTCCCGGGACTCCAGTTCGTTAGTATGTAGTGAGAAGAGCCCAACTGAAAGCTTCTTCAGAAGTTTTGATTTACAACAGGGTTTGGTGAGAAAGGAAGAGCCTATTAACAACCATCCATTTGTAACTTGTGGTTAG | 2073 | 45.39 | MVNGIARRIRRSGSEEKKSISHLSRLSRFRCRFPGNVYSLPEMKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMACSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETESTQVLSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRLTDTEMFFLASMYFSFPRGEGGPGKCLASGKHTWLSDVLNLPSEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMMAERKDESTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIHSPNLAHVHGLKQGNPAEIYGSPTPPVNNNHEQQLVNGVRDEFCLNPYQSQKLAQMQIDFSAATSRPSVINRVIADTEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKAMEFEREKSGLTSSDATPSEGNPEIENKEQFLDVDIEVEAAHDEVIVKVSCPLESHPASRVIKAMKDAQINVVDSKLSEANDKVLHTFVIKSPGSEQLTKELFIAAFSRDSSSLVCSEKSPTESFFRSFDLQQGLVRKEEPINNHPFVTCG | 690 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 847125 | 850281 | + | CePI673135_05g000890.1 | Cec05g0089 | 201892 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g0089 | 690 | Gene3D | - | 478 | 549 | IPR036638 | GO:0046983(InterPro) | |
Cec05g0089 | 690 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 485 | 534 | IPR011598 | GO:0046983(InterPro) | |
Cec05g0089 | 690 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 488 | 546 | IPR036638 | GO:0046983(InterPro) | |
Cec05g0089 | 690 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 94 | 282 | IPR025610 | - | |
Cec05g0089 | 690 | CDD | bHLH_AtAIB_like | 482 | 555 | - | - | |
Cec05g0089 | 690 | FunFam | Transcription factor bHLH13 | 478 | 551 | - | - | |
Cec05g0089 | 690 | MobiDBLite | consensus disorder prediction | 545 | 565 | - | - | |
Cec05g0089 | 690 | MobiDBLite | consensus disorder prediction | 451 | 496 | - | - | |
Cec05g0089 | 690 | PANTHER | MYC | 81 | 648 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro) | |
Cec05g0089 | 690 | MobiDBLite | consensus disorder prediction | 450 | 496 | - | - | |
Cec05g0089 | 690 | Pfam | Helix-loop-helix DNA-binding domain | 489 | 535 | IPR011598 | GO:0046983(InterPro) | |
Cec05g0089 | 690 | SMART | finulus | 491 | 540 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1500 | Cec-Chr4:34530335 | Cec05g0089 | Cec-Chr5:847125 | 6.30E-12 | dispersed | |
Cec05g0089 | Cec-Chr5:847125 | Cec07g0109 | Cec-Chr7:1156948 | 2.20E-71 | dispersed | |
Cec05g0089 | Cec-Chr5:847125 | Cec10g0170 | Cec-Chr10:1673160 | 8.40E-63 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29472 | PF14215 | bHLH-MYC_N | 4.40E-54 | CL0161 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g0089 | - | - | - | 0.0 |