Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g0152 | ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTTCTTCCTCTTCCAATAACTCTATTCCTTTTTCTTTTACCAGAGACCTAACCAACCAAACAAAAAGTCATTTCTTCTCCCTTCAAGATCCATTTCAACCCCCCAGTTGCAACTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCCCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCCAAAATTCTGACCCATCACAAGCAACATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAGTCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGTCTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGATGAGTTTCCGGCGAGTTTCGACCTTCCATGGTTGTTTAATGGAAATCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA | 1008 | 50.1 | MEVDWDLHAVVRGYSAVPSAATIIPSSSSSSSSSSVSSSSNNSIPFSFTRDLTNQTKSHFFSLQDPFQPPSCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSVPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPASFDLPWLFNGNPDSEIVKLPC | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1266840 | 1268035 | - | CePI673135_05g001520.1 | Cec05g0152 | 201955 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g0152 | 335 | SUPERFAMILY | WRKY DNA-binding domain | 155 | 218 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g0152 | 335 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 5 | 269 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
Cec05g0152 | 335 | MobiDBLite | consensus disorder prediction | 212 | 281 | - | - | |
Cec05g0152 | 335 | FunFam | WRKY transcription factor 22 | 141 | 211 | - | - | |
Cec05g0152 | 335 | Pfam | WRKY DNA -binding domain | 159 | 216 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g0152 | 335 | MobiDBLite | consensus disorder prediction | 87 | 106 | - | - | |
Cec05g0152 | 335 | MobiDBLite | consensus disorder prediction | 215 | 243 | - | - | |
Cec05g0152 | 335 | ProSiteProfiles | WRKY domain profile. | 152 | 218 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g0152 | 335 | MobiDBLite | consensus disorder prediction | 22 | 48 | - | - | |
Cec05g0152 | 335 | MobiDBLite | consensus disorder prediction | 83 | 149 | - | - | |
Cec05g0152 | 335 | Gene3D | WRKY domain | 141 | 211 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec05g0152 | 335 | SMART | WRKY_cls | 157 | 217 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0090 | Cec-Chr1:744261 | Cec05g0152 | Cec-Chr5:1266840 | 3.40E-41 | dispersed | |
Cec04g2251 | Cec-Chr4:40147310 | Cec05g0152 | Cec-Chr5:1266840 | 2.90E-38 | dispersed | |
Cec05g0152 | Cec-Chr5:1266840 | Cec07g0865 | Cec-Chr7:21284517 | 6.20E-35 | dispersed | |
Cec05g0149 | Cec-Chr5:1243502 | Cec05g0152 | Cec-Chr5:1266840 | 1.50E-11 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29479 | PF03106 | WRKY | 4.50E-25 | CL0274 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g0152 | K13425 | - | csv:101217082 | 481.485 |