Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0152 ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTTCTTCCTCTTCCAATAACTCTATTCCTTTTTCTTTTACCAGAGACCTAACCAACCAAACAAAAAGTCATTTCTTCTCCCTTCAAGATCCATTTCAACCCCCCAGTTGCAACTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCCCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCCAAAATTCTGACCCATCACAAGCAACATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAGTCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGTCTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGATGAGTTTCCGGCGAGTTTCGACCTTCCATGGTTGTTTAATGGAAATCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA 1008 50.1 MEVDWDLHAVVRGYSAVPSAATIIPSSSSSSSSSSVSSSSNNSIPFSFTRDLTNQTKSHFFSLQDPFQPPSCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSVPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPASFDLPWLFNGNPDSEIVKLPC 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1266840 1268035 - CePI673135_05g001520.1 Cec05g0152 201955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0152 335 SUPERFAMILY WRKY DNA-binding domain 155 218 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g0152 335 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 269 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cec05g0152 335 MobiDBLite consensus disorder prediction 212 281 - -
Cec05g0152 335 FunFam WRKY transcription factor 22 141 211 - -
Cec05g0152 335 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g0152 335 MobiDBLite consensus disorder prediction 87 106 - -
Cec05g0152 335 MobiDBLite consensus disorder prediction 215 243 - -
Cec05g0152 335 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g0152 335 MobiDBLite consensus disorder prediction 22 48 - -
Cec05g0152 335 MobiDBLite consensus disorder prediction 83 149 - -
Cec05g0152 335 Gene3D WRKY domain 141 211 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g0152 335 SMART WRKY_cls 157 217 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0090 Cec-Chr1:744261 Cec05g0152 Cec-Chr5:1266840 3.40E-41 dispersed
Cec04g2251 Cec-Chr4:40147310 Cec05g0152 Cec-Chr5:1266840 2.90E-38 dispersed
Cec05g0152 Cec-Chr5:1266840 Cec07g0865 Cec-Chr7:21284517 6.20E-35 dispersed
Cec05g0149 Cec-Chr5:1243502 Cec05g0152 Cec-Chr5:1266840 1.50E-11 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29479 PF03106 WRKY 4.50E-25 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0152 K13425 - csv:101217082 481.485