Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0161 ATGATTCGCCGGAATCCTCCATTGCTGGGGTTTTCCGATGAGGTCAATGCCCTTAAAACCTCTGATTTGCTTTCCTTAGTTCCTCCTCTTTCCCTCTCTGAATCGATCGAAGAAGAAGAAATGTCAGTTTACGATGCTGCATTTGTGAACACGGAGCTCTCTAAACCCACCTCGATTTTCGGCCTTCGTCTCTGGGTTGTTATCGGAATCTTTGTCGGAGCTCTAATAGTTCTCGCACTGTTTCTTCTTTCACTCTGCCTGACTTCTCGCAAGCGGAACCGCCATAAGAACCAAATCCGTTTTCCTAAGTCCACAACCCACCATTCTCCTCCTGCTGTTTCCAAAGAGATCCAGGAGATCGTCCACCACGCCGTGCCGGATCATCATCACCATGTTCAGCCGGAAATTCATGTCGAGATCGGGAAATTGGAGCATCGGGTTGTTTTCTCTGATAGACCTTCTAGTGGTGAGAGTAGAGGCACTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCACACCTCGGTTGGGGCAGATGGTATACTCTCAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAATGTGATTGGAGAAGGTGGATATGGGATCGTATATTTAGGCATTTTAGGAGATGGTACCAGAATTGCTATCAAGAATCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTAGAAGCAATTGGACGCGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATTTAGACCAATGGCTTCATGGCGATGTTGGGGATGTGAGCCCTTTGACGTGGGAGATTCGTGTTAACATCATACTTGGCACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTTCATCGTGATGTAAAATCAAGCAACATACTGCTTGATCGTCACTGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCTGAAAGAAGCTATGTGACAACTCGTGTAATGGGCACATTTGGCTATGTTGCACCTGAGTACGCCTGCACTGGAATGTTGAATGAAAAGAGTGATGTTTATAGCTTTGGAATTCTGATTATGGAGATAATTTCCGGGCGGAGCCCTGTTGATTACAGTAGACCTCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAAGCAATGGTTGGTGACAGAAAATCTGAGGAAGTGGTTGACCCCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTCAAACGTGTTTTGCTGGTTGCTCTTCGTTGTGTCGATCCTGATGCTACAAAGAGGCCGAAAATGGGACACGTCATTCACATGCTCGAGGCAGATAATTTGCTGTCTCATGATGAACACCGGGTTGGTAAGGACTCTTCTCATTCAATTCAAGGCCATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAATCAGAAAGATGAACAGGCATCTTCTAATGTATGTGAAGGTGACAGTGATGGAAACATTCACCATCCAACAAGTTTGGTAGAGACATCTCCAACTGTAACCTCTACTTCATGTGCTCTTTTGCTCTGTTCTGACTGGACCAGTAAGGCTAAGATGTGGACTAGAACTGAGGCATTCGCCTTCGAAACCACGACGGGATTTTGTCTGATCTTCACGTTAGGCTGCCGAAGTCTCATCCTAAGCTGGCTGTGGATGCTTCCGAAAGGATCAGATCAATCCTTTGGTTTATGTGCAACCATACATTGTCTTTTCGAGGACTCTGTCAAACTCAAAGCCTTTGGGAGTTTCTTCAAAACCCTTTATCCAAAGCTTGCTTTTAGAGGTGAAGTTGAAACAAGCACAAAGCACTTGGTAGCTGTAGTTTATACTTGGAAGGTTATCACCGGCTTTATCATCATCAATTCACAAACACAGCTCCGCTCATTGCCACCACGCGAGAATTCAACGTTTTCTGGCTGCGATACTTTCTTAGAAATTGCCTTTGCTTTCTTGTTTCTGAATCTGTGTTATATAATGAGCAGACCACAAGAGCCGCACCGGCCCTTCTTTCCTTTTGGGAATCCTTTCCGTGCAATATCACCAAAGGGTTCAAAATTGTCTTCTAGACTTGTTTTTCTTTTAGCTACTTTTGAGGATTCCTTGGCAGAGAGGCTGAAAAAGCTTACTCCAAAATCGGAGAATGACATACTCAGCTTCTCATGGATGGAATTAGCATTGAAGCTGCTGTACGAAACTCACAACGATGTAAAAACCCTTATAGAAGAGCTTGGGTTCCCCGTATCTGATTGGGATGAGAAATGGCTAGATGAGTACCTGAACATCAGTGTGAAATTACTTGATATATGCAATGATTTTAGCTCTGAGCTCTCACAGTTGAATCAAGGTCATCTGATACTTCGGTGTGCCTTGCACAATCTGGAATCTACATCTTCCAACCAGTTTGTTCATGCCCGTTCTTCGCTAGATGCATGGAATCAACATATTAGTTCCAGAACCTCCAGAGTTGAAAGCTGTGCTCCTATTTTGGACTGTCTTGGGGAATCACTTGATCTTCCAAAGGTTAAGAACTCATCCAAAGGCAAGGTTTTGATGCATGTGTTGTACGGAGTGAAGGTGGTGACTTTGTTTATTTGCAGTGTTTTTGCTTCTGCCTTCTCAGGTTCTTCCAAAAGGTTGTTACCCACCAATGTTCCAGATACATTCAGATGGGCACACGCATTTACTGAATTACAGAAAAATGTAAATATGGAAATTAAGAATATTTATTCTAGTGGAAGGTTTACTGCGTTGAGAGATGTTGATGCAGTTGATGGGAGTGTAAAAAAACTACATTCCATGATTCAAGGTAATATGGATGGCTGCATGAAAGTGGAAGAATTCCAGAATTTGATTGTAGATTTGAGGAGGGAGGCAGAGAAGCTTACACAAGGTGTTGATCGTCTTACAAAACAAGTTGACGAGTTTTTTCACATTGTTTTATCTGGACGTGATGCATTGCTTTCAAATCTTAGAGCAAGTGAAACAGAATTTGATCGGGGAATTGGGTGGCTGTCTACAAGGCAACTGTGA 3144 43.77 MIRRNPPLLGFSDEVNALKTSDLLSLVPPLSLSESIEEEEMSVYDAAFVNTELSKPTSIFGLRLWVVIGIFVGALIVLALFLLSLCLTSRKRNRHKNQIRFPKSTTHHSPPAVSKEIQEIVHHAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGTVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRHWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSHDEHRVGKDSSHSIQGHQHENRAVPRRVNNQKDEQASSNVCEGDSDGNIHHPTSLVETSPTVTSTSCALLLCSDWTSKAKMWTRTEAFAFETTTGFCLIFTLGCRSLILSWLWMLPKGSDQSFGLCATIHCLFEDSVKLKAFGSFFKTLYPKLAFRGEVETSTKHLVAVVYTWKVITGFIIINSQTQLRSLPPRENSTFSGCDTFLEIAFAFLFLNLCYIMSRPQEPHRPFFPFGNPFRAISPKGSKLSSRLVFLLATFEDSLAERLKKLTPKSENDILSFSWMELALKLLYETHNDVKTLIEELGFPVSDWDEKWLDEYLNISVKLLDICNDFSSELSQLNQGHLILRCALHNLESTSSNQFVHARSSLDAWNQHISSRTSRVESCAPILDCLGESLDLPKVKNSSKGKVLMHVLYGVKVVTLFICSVFASAFSGSSKRLLPTNVPDTFRWAHAFTELQKNVNMEIKNIYSSGRFTALRDVDAVDGSVKKLHSMIQGNMDGCMKVEEFQNLIVDLRREAEKLTQGVDRLTKQVDEFFHIVLSGRDALLSNLRASETEFDRGIGWLSTRQL 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1373772 1383216 + CePI673135_05g001610.1 Cec05g0161 201964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0161 1047 MobiDBLite consensus disorder prediction 506 520 - -
Cec05g0161 1047 CDD STKc_IRAK 204 470 - -
Cec05g0161 1047 Pfam Protein BPS1 788 1007 IPR004320 GO:0048364(InterPro)|GO:0048367(InterPro)
Cec05g0161 1047 SMART serkin_6 198 469 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g0161 1047 SUPERFAMILY Protein kinase-like (PK-like) 177 470 IPR011009 -
Cec05g0161 1047 MobiDBLite consensus disorder prediction 151 170 - -
Cec05g0161 1047 FunFam Probable serine/threonine-protein kinase At1g01540 178 273 - -
Cec05g0161 1047 MobiDBLite consensus disorder prediction 480 505 - -
Cec05g0161 1047 Pfam Protein tyrosine and serine/threonine kinase 201 468 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g0161 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g0161 1047 Coils Coil 982 1009 - -
Cec05g0161 1047 PANTHER OS01G0323000 PROTEIN 47 511 IPR052232 -
Cec05g0161 1047 MobiDBLite consensus disorder prediction 480 525 - -
Cec05g0161 1047 Gene3D Phosphorylase Kinase; domain 1 180 273 - -
Cec05g0161 1047 FunFam Putative receptor-like serine/threonine-protein kinase 274 484 - -
Cec05g0161 1047 ProSitePatterns Protein kinases ATP-binding region signature. 204 226 IPR017441 GO:0005524(InterPro)
Cec05g0161 1047 Gene3D Transferase(Phosphotransferase) domain 1 274 486 - -
Cec05g0161 1047 ProSiteProfiles Protein kinase domain profile. 198 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g0161 1047 MobiDBLite consensus disorder prediction 154 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0544 Cec-Chr2:5220020 Cec05g0161 Cec-Chr5:1373772 2.30E-137 dispersed
Cec04g1381 Cec-Chr4:33448330 Cec05g0161 Cec-Chr5:1373772 1.90E-165 dispersed
Cec05g0161 Cec-Chr5:1373772 Cec08g1662 Cec-Chr8:27947811 4.60E-169 dispersed
Cec11g0592 Cec-Chr11:6499016 Cec05g0161 Cec-Chr5:1373772 1.50E-49 dispersed
Cec09g1001 Cec-Chr9:9684746 Cec05g0161 Cec-Chr5:1373772 3.60E-10 transposed
Cec05g0161 Cec-Chr5:1373772 Cec05g1002 Cec-Chr5:8799995 8.00E-73 wgd
Cec05g0161 Cec-Chr5:1373772 Cec06g0354 Cec-Chr6:4067150 5.10E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71968 PF07714 PK_Tyr_Ser-Thr 1.10E-44 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0161 - - - 0.0