Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0166 ATGAAACTACGAATTCCGGCGCAGAAATTTTCTCGAGAAAGTGATGGAAAATCAGTAATCGCTTCGCTACATTTGAAGCTCGCGATTCGAACTTACCGAAGAAAATTTTACTTTTGGTTGGTGATTCACTGGGCCGAGCACTTACTTGGTGGGCCGGCCCAACACGAGCCCGTTACACACCGACCCATTACCATCTGGAGTTATGGCTCATCTACCGCTGGATGGATCATCTCGCGGCAATGGAATGAACGTATCCGACGGTCTCAAATAAATTTAATCGTCTACGGCTTTGCTCACAATTCACAAGTTGTTGCTTCCAATTTTCTCGGCACAATCCCTTTGACATTGCGTTCCTCGCAAGGCAGGAACTTGTCTGAGGAGCTTTTAGGAGCTACATTTTCACTTCAATCAGATTCGTCCATAACAGATTTAGTATCTCAATTGATAAATCTTGTGTTCCAGTCTGGTTCTTACGGAGTTTACTGGACACCGAGTGTTATTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGCATGGCGTTTACATATCCCTAGTTATGGTACACGTCGCATTGGTACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGAAATCTATCAAATTCTCGATTTTATTCATCGGCTTCGGGTAGGAAAGTTGATATAACTGGAGATACTGGTGTTCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTCTGGCAGAGTGCCGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTATCGGATGAATTATCTCCGCATGTAGATAAACTCTTCGATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCCAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATACTATCTGGAAGCATACCCAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCTTTTTCTCAAATTGGCATGATGGTTGCACCAACTGCAGTAGCACCAGAGTTTGTTTCACAGGCATGTAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACCATTGATAAAGTTTCATCTGTTGCTTTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCCGTTCAATCTATGTTGACAGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACATTCTTGGTAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCACTTTTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTCATTATAAATAAGTCGCGGGCACAATGGCGAGCAATCACAAAGAAAATTCCTTTGCAAGTTGATGATTTCAGTACAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTTATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTCGGTTGTAACCTTAAGAAAATGGGTAAAGAAGAATTGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAGATCATTAAGGAGAATGGTGCAACCTTAGGTAGCACCTTGTCAGATTGGACGAACAAGTAA 1968 42.48 MKLRIPAQKFSRESDGKSVIASLHLKLAIRTYRRKFYFWLVIHWAEHLLGGPAQHEPVTHRPITIWSYGSSTAGWIISRQWNERIRRSQINLIVYGFAHNSQVVASNFLGTIPLTLRSSQGRNLSEELLGATFSLQSDSSITDLVSQLINLVFQSGSYGVYWTPSVILNKRYYKDESHSLKSASAWRLHIPSYGTRRIGTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTGVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSIPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPEFVSQACRGAVILSLVWFIYRWKTNVLSRALATQTFAGLDRDRLLTIDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPLQVDDFSTVSQISDGIKNMLMSHPKVFLGKEAPYCFLSQIESTYAELTFGCNLKKMGKEELFSTEQDILLQSVQIIKENGATLGSTLSDWTNK 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1399456 1405159 - CePI673135_05g001660.1 Cec05g0166 201969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0166 655 Pfam Mechanosensitive ion channel, beta-domain 484 551 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g0166 655 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 401 483 IPR011014 GO:0016020(InterPro)
Cec05g0166 655 Gene3D - 396 498 - -
Cec05g0166 655 Gene3D - 500 548 IPR023408 -
Cec05g0166 655 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 284 652 - -
Cec05g0166 655 SUPERFAMILY Sm-like ribonucleoproteins 484 549 IPR010920 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0166 K22047 - csv:101220483 882.478