Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0166 ATGAAACTACGAATTCCGGCGCAGAAATTTTCTCGAGAAAGTGATGGAAAATCAGTAATCGCTTCGCTACATTTGAAGCTCGCGATTCGAACTTACCGAAGAAAATTTTACTTTTGGTTGGTGATTCACTGGGCCGAGCACTTACTTGGTGGGCCGGCCCAACACGAGCCCGTTACACACCGACCCATTACCATCTGGAGTTATGGCTCATCTACCGCTGGATGGATCATCTCGCGGCAATGGAATGAACGTATCCGACGGTCTCAAATAAATTTAATCGTCTACGGCTTTGCTCACAATTCACAAGTTGTTGCTTCCAATTTTCTCGGCACAATCCCTTTGACATTGCGTTCCTCGCAAGGCAGGAACTTGTCTGAGGAGCTTTTAGGAGCTACATTTTCACTTCAATCAGATTCGTCCATAACAGATTTAGTATCTCAATTGATAAATCTTGTGTTCCAGTCTGGTTCTTACGGAGTTTACTGGACACCGAGTGTTATTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGCATGGCGTTTACATATCCCTAGTTATGGTACACGTCGCATTGGTACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGAAATCTATCAAATTCTCGATTTTATTCATCGGCTTCGGGTAGGAAAGTTGATATAACTGGAGATACTGGTGTTCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTCTGGCAGAGTGCCGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTATCGGATGAATTATCTCCGCATGTAGATAAACTCTTCGATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCCAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATACTATCTGGAAGCATACCCAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCTTTTTCTCAAATTGGCATGATGGTTGCACCAACTGCAGTAGCACCAGAGTTTGTTTCACAGGCATGTAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACCATTGATAAAGTTTCATCTGTTGCTTTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCCGTTCAATCTATGTTGACAGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACATTCTTGGTAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCACTTTTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTCATTATAAATAAGTCGCGGGCACAATGGCGAGCAATCACAAAGAAAATTCCTTTGCAAGTTGATGATTTCAGTACAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTTATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTCGGTTGTAACCTTAAGAAAATGGGTAAAGAAGAATTGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAGATCATTAAGGAGAATGGTGCAACCTTAGGTAGCACCTTGTCAGATTGGACGAACAAGTAA 1968 42.48 MKLRIPAQKFSRESDGKSVIASLHLKLAIRTYRRKFYFWLVIHWAEHLLGGPAQHEPVTHRPITIWSYGSSTAGWIISRQWNERIRRSQINLIVYGFAHNSQVVASNFLGTIPLTLRSSQGRNLSEELLGATFSLQSDSSITDLVSQLINLVFQSGSYGVYWTPSVILNKRYYKDESHSLKSASAWRLHIPSYGTRRIGTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTGVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSIPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPEFVSQACRGAVILSLVWFIYRWKTNVLSRALATQTFAGLDRDRLLTIDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPLQVDDFSTVSQISDGIKNMLMSHPKVFLGKEAPYCFLSQIESTYAELTFGCNLKKMGKEELFSTEQDILLQSVQIIKENGATLGSTLSDWTNK 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1399456 1405159 - CePI673135_05g001660.1 Cec05g0166 201969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0166 655 Pfam Mechanosensitive ion channel, beta-domain 484 551 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g0166 655 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 401 483 IPR011014 GO:0016020(InterPro)
Cec05g0166 655 Gene3D - 396 498 - -
Cec05g0166 655 Gene3D - 500 548 IPR023408 -
Cec05g0166 655 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 284 652 - -
Cec05g0166 655 SUPERFAMILY Sm-like ribonucleoproteins 484 549 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0166 K22047 - - csv:101220483 882.478
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0166 . 263 654 Mechanosensitive Ion Channel Family AT4G00290 67.3 5.7e-154 541.2
Cec08g1199 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.4 4.8e-196 681.4
Cec10g0751 . 106 779 Mechanosensitive Ion Channel Family AT5G10490 55.3 1.1e-189 660.2
Cec08g1199 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 57.7 2.0e-197 686.0
Cec10g0751 . 94 556 Mechanosensitive Ion Channel Family AT1G58200 65.2 8.3e-172 600.9
Cec02g1160 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.1 2.8e-260 895.2
Cec02g0406 . 90 939 Mechanosensitive Ion Channel Family AT1G53470 51.3 2.8e-236 815.5
Cec02g1160 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.9 4.4e-247 851.3
Cec02g1160 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.6 5.2e-280 960.7
Cec02g0406 . 59 937 Mechanosensitive Ion Channel Family AT1G78610 56.2 1.1e-266 916.4
Cec02g1160 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.4e-237 817.8
Cec02g0406 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.4 7.0e-221 764.2
Cec05g1740 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 52.9 3.3e-182 635.6
Cec05g1740 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.2e-202 702.6
Cec03g1583 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.6 8.6e-199 690.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33