Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0210 ATGCGTGATTCGATCCCACACTCCTCTACTCCCTTCCGAGCGGTGGATAATTCGCCTCTGCTTGGCCACTCCGTCACCGATGGCCTTTTCCGTTCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCCCTTCGAGGTGCTGTTCGTCTTCTCCGCCGTGCAAGTGGCCGCCAGATGATGCTCCGGGAGCCTTCTGTTCGGGTTCGTGAGACCGCCGCCGAGCAGCTCGAGGAGCGCCAGAGCGATTGGGCGTACTCCAAGCCCATTATTCTTCTGGACCTTCTATGGAATTTGGCCTTCGTCATCATTAGTTTCACTGTTCTAGGGCTCAGCACGCGGGAAAGTCCTTCAGTTCCTCTCAGGTTTTGGATCATTGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCTGTTGAGTATAAGCGTCGGCGCTCGACAAGAGAGCCTGTTGGATTGGACCGTACCGGTGGTTGGACGAGCGGCGAGGATTCAAATTCGATCTCTGGAAGTGATGGAGATGATTATGCGACAGAGGTCACCGTGAATGAAGAAGAATCTAGCAATCTTGTGAAGCATATTGAGTCTGCAAATACAATGTTCTCTTTCATCTGGTGGCTGTTGGGCTTTTATTGGGTAACTGCTGGAGGCCAAGAATTGATAGAGGGTTCACCTCAGTTATACTGGCTTTGTATTACATTCCTTGCTTTTGATGTCGTATTTGTTCTGATTTGCGTTGCAATTGCATGTCTTGTTGGCATTGCTATTTGCTGCTGTCTGCCTTGCATCATTGCCATCTTGTATGCAGTTACCGATCAGGAAGGAGCTACAAAGGAAGAGATCGAGCGCTTACCGAAGTACAAATTTAACAAAACGGGTGATGTTGAGAAAGTAAATGGTGATATTCAAGAATCTGGTGGAGGAATAATGACTAACTGTGACAACGAAGCACCTACAGAGCGTTTTCTTCGCCCTGAAGATTCTGAATGTTGCATCTGCCTCTCTGCTTACGAGAACGGAGCGGAGCTACGAGAACTTCCCTGTAACCACCATTTTCACTGCAACTGCATCGACAAATGGCTGCACATGAATGCCACCTGCCCACTCTGCAAGTTCAACATCTTGAAGCCAGACAGTTCCAGTAGCGAAGAAGTGTGA 1158 48.88 MRDSIPHSSTPFRAVDNSPLLGHSVTDGLFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLREPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLAFVIISFTVLGLSTRESPSVPLRFWIIGYALQCIIHMSCVAVEYKRRRSTREPVGLDRTGGWTSGEDSNSISGSDGDDYATEVTVNEEESSNLVKHIESANTMFSFIWWLLGFYWVTAGGQELIEGSPQLYWLCITFLAFDVVFVLICVAIACLVGIAICCCLPCIIAILYAVTDQEGATKEEIERLPKYKFNKTGDVEKVNGDIQESGGGIMTNCDNEAPTERFLRPEDSECCICLSAYENGAELRELPCNHHFHCNCIDKWLHMNATCPLCKFNILKPDSSSSEEV 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1711977 1714071 - CePI673135_05g002100.1 Cec05g0210 202013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0210 385 MobiDBLite consensus disorder prediction 150 175 - -
Cec05g0210 385 SUPERFAMILY RING/U-box 319 377 - -
Cec05g0210 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 379 IPR013083 -
Cec05g0210 385 Pfam Ring finger domain 329 371 IPR001841 -
Cec05g0210 385 CDD RING-H2_PA-TM-RING 329 371 - -
Cec05g0210 385 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Cec05g0210 385 PANTHER TARGET OF ERK KINASE MPK-1 45 375 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cec05g0210 385 MobiDBLite consensus disorder prediction 159 175 - -
Cec05g0210 385 SMART ring_2 330 370 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0210 Cec-Chr5:1711977 Cec10g0360 Cec-Chr10:4268197 1.30E-126 dispersed
Cec05g0210 Cec-Chr5:1711977 Cec07g1624 Cec-Chr7:31773142 7.10E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0210 - - - 0.0