Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0230 ATGGCGGACCACGATCTCACCTCGCCGCTGCTCCCCGCCGAACCCTCAGACCGCGTCGACGTAATCCTCAGAATCGAAGACGACGACGGCGCTTCACCGGAGCAGATCAACAATCAGAACGGTAATCATCACGATCCTCGATTGTGCTTTACCAATCCTTACGGGTTTATTGGCTCCAATGGATTTTCCGTTCCCGATACAACCACGGTGGATCCATTTCGGAACAACACGCCAAGTATCGATGGAGTTTATGAGTGGGTTAAGATTGTGGTTTGCATACCTATTGCGCTTGCTCGTCTCGTGCTCTTTGGGCTATGTCTTTTGGTTGGATATATAGCCACCAAGACGGCGCTTTATGGGTGGAAGGACAAGGAGAATCCGATGCCTAAGTGGAGGTGGAGGCTCATGGGGGTTACGAGGCTTTGCGGACGGTGTATTCTCTTTTCTTTTGGATATCATTGGATAACAAGAAAAGGGAAGCCTGCTCCAAGGGAAATTGCACCAATTATTGTATCGAATCATGTATCTTACATAGAACCTATCTTTTATTTTTACGAGTTATTTCCAACTATGGTCGCAGCCGAGTCCCATGATTCCATACCCTTTGTTGGGACCATTATCAGAGCCATGCAGGTGATATATGTAGATAGATTTTCACCTACATCAAAGAAGCATGCCATTAGTGAAATAAAGAGAAAGGCTTCTTGTAATAGATTTCCAAGAGTTTTGTTATTTCCGGAGGGAACCACTACGAATGGAAGGGCTCTTATTTCTTTTCAACTTGGTGCGTTTCTTCCTGGTTATTCAATCCAACCTGTTGTTGTCCGTTATCCTCATGTACACTTTGACCAATCATGGGGGCTTGTTTCTTTGCCAATGCTCATGATTAGGATGTTTTTGCAATTTCACAATTACATGGAGGTTGAGTATCTTCCTGTTATTTCACCTCGATATAATGGAAAAGAGAGCACTGTTGATTTTGCTAAGAGGACTAGCCGTGCAATGGCCACTGCACTCAATGTTGTCCAAACGCCCCATTCGTATGGAGATTTAATGCTTCTGACCAAGGCTACCCAGGCAAATCAAGAGAGACCCTCTGATTATATGATTGGAATGTCCAAGATGGAACAAGTCAGCAGCCTCGAAGCTGTTGATTTTCTCGACAAGTTTCTATCGATGAATCCTGACTCCAGTGGCCGCGCTACATATAATGGATTTATAAGAGCTCTAAGACTCAGGGCTTGTGCGGTTGCTGAAGAGATATTTTCTTTTATTGATATAGAGAAGATGGGAACAATAACATACAAGCAGTACCTGTTCGGTTCTTTGCATGTTATGAAGCTGCAAGGTTTTCAGCGATCCTGTGAGCTGATCCTTACTGAATGTAGCAATGAAGGAGATAAAATTTCAGAACAAAAGCTAGAAGAATTGATAAGGTCAGCTATACCCGATCTGAATGCTGACGAGGCTCATGAGCTCTTGAAACTATTTGATACCGATGGCGACGGAAAGATTAGCAAGAATGATTTGTCTGGCTGCTTAAGAAGGAACCCACTACTGATTGCACTTTTTTCGCAGTGTTTGCTACCGAGTTGCCATTATCTTGTGGAGATTCAGATTTTTCTCCATGTCATTCCAAACTGGAGAAACCAAGCCTGGTTTGAGGGATTTAAAAAAAAAAAAAAAAAAATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAGCTTTATGAATTTTCAAGCTCAAGCATGCAGGCCACGGTGGGGCGATATCTAAGGCATACAAGATCACAAACCCATCATCTTGAACCTTTAGCTCATCAACACGATTTACAAGCTGTTCAGAATGAGGCTGAAGGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGGATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCTCATGTTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAAGAGAAAAGGAGAAGAACCTGGAAGCTGAGAATGCAAAGCTAGCTAAAAAGTATTTTGTTGAACGTAAGCCTCAACAATCAGCAACTCAGCAGTTAGAAGAAGTTTCAGCTTGTCCAGAAAGTAGTTCCGTTTCAGACGTTGAAACGGAGTTGTTCATTGGCCCTCCCAAGTCCAGGTCCAACTTGAATAATGACGTCAATAAGAAAAAGAGAGCCACAATGTGTGTTGAGGAAGAGAGGGAATTATTGGCTACCCAATGA 2415 43.11 MADHDLTSPLLPAEPSDRVDVILRIEDDDGASPEQINNQNGNHHDPRLCFTNPYGFIGSNGFSVPDTTTVDPFRNNTPSIDGVYEWVKIVVCIPIALARLVLFGLCLLVGYIATKTALYGWKDKENPMPKWRWRLMGVTRLCGRCILFSFGYHWITRKGKPAPREIAPIIVSNHVSYIEPIFYFYELFPTMVAAESHDSIPFVGTIIRAMQVIYVDRFSPTSKKHAISEIKRKASCNRFPRVLLFPEGTTTNGRALISFQLGAFLPGYSIQPVVVRYPHVHFDQSWGLVSLPMLMIRMFLQFHNYMEVEYLPVISPRYNGKESTVDFAKRTSRAMATALNVVQTPHSYGDLMLLTKATQANQERPSDYMIGMSKMEQVSSLEAVDFLDKFLSMNPDSSGRATYNGFIRALRLRACAVAEEIFSFIDIEKMGTITYKQYLFGSLHVMKLQGFQRSCELILTECSNEGDKISEQKLEELIRSAIPDLNADEAHELLKLFDTDGDGKISKNDLSGCLRRNPLLIALFSQCLLPSCHYLVEIQIFLHVIPNWRNQAWFEGFKKKKKKMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSQTHHLEPLAHQHDLQAVQNEAEGLLKEIESLEVSKRKLLGEGLGSSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLREKEKNLEAENAKLAKKYFVERKPQQSATQQLEEVSACPESSSVSDVETELFIGPPKSRSNLNNDVNKKKRATMCVEEERELLATQ 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1845998 1867117 + CePI673135_05g002300.1 Cec05g0230 202033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0230 804 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Cec05g0230 804 PRINTS MADS domain signature 601 622 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0230 804 PRINTS MADS domain signature 586 601 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0230 804 PRINTS MADS domain signature 566 586 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0230 804 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 67 412 - GO:0006644(PANTHER)|GO:0071618(PANTHER)
Cec05g0230 804 FunFam Agamous-like MADS-box protein AGL13 576 641 - -
Cec05g0230 804 Gene3D - 576 646 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0230 804 SMART plsc_2 168 278 IPR002123 GO:0016746(InterPro)
Cec05g0230 804 Coils Coil 686 706 - -
Cec05g0230 804 ProSiteProfiles K-box domain profile. 652 743 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec05g0230 804 SMART madsneu2 564 623 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0230 804 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 150 343 - -
Cec05g0230 804 CDD LPLAT_LPCAT1-like 144 352 IPR045252 GO:0008374(InterPro)
Cec05g0230 804 Pfam EF-hand domain pair 466 517 IPR002048 GO:0005509(InterPro)
Cec05g0230 804 Coils Coil 708 735 - -
Cec05g0230 804 SUPERFAMILY SRF-like 566 641 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0230 804 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509(InterPro)
Cec05g0230 804 SUPERFAMILY EF-hand 378 528 IPR011992 -
Cec05g0230 804 Coils Coil 652 679 - -
Cec05g0230 804 CDD MADS_MEF2_like 566 639 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec05g0230 804 MobiDBLite consensus disorder prediction 764 791 - -
Cec05g0230 804 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 573 620 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0230 804 Pfam Acyltransferase 162 275 IPR002123 GO:0016746(InterPro)
Cec05g0230 804 Pfam K-box region 648 735 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec05g0230 804 Gene3D - 361 526 - -
Cec05g0230 804 ProSiteProfiles MADS-box domain profile. 564 624 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0230 804 ProSitePatterns MADS-box domain signature. 566 620 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0230 Cec-Chr5:1845998 Cec06g0025 Cec-Chr6:282325 5.80E-55 dispersed
Cec08g1571 Cec-Chr8:27295762 Cec05g0230 Cec-Chr5:1845998 1.70E-28 transposed
Cec05g0230 Cec-Chr5:1845998 Cec05g0925 Cec-Chr5:8073960 1.90E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29489 PF01553 Acyltransferase 2.50E-12 CL0228 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0230 K13510 - csv:101209255 1016.53