Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0251 ATGGATCGAGCCACCGCCGCACACGGCCGTCCGCTTCCGCCGCCGTTCATTTCAAGAAACCTCCATCTCAATCCCCACCACCATTTCCTCCACCAAAATTCCGATCAACAGCACAATGGAAATAGTAGCTCCGGCGGCGACGGCGGCCGAGACGGTGAGGTCTTGAGACGACCACGAGGCCGCCCCGCCGGGTCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGTGATAGCGCCAACGCACTCCGCTGCCACGTCATCGAAATCGCCGACGCCAGTGACGTGATCGAAACCCTCACGATTTTCGCGCGAAAGCGCCAGCGTGGCATTTGCGTGCTGACCGGCGCCGGAGCGGTCACCAACGTCACCCTCAAGCAGCCGGGGGCCGCGGTCGCCGCCGCTGGACCGGTGATCTCTCTGCCGGGGAGATTTGAGATTCTGTCGTTGTCGGGGTCGTTTCTGCCGCCGCCAGCGCCAGCGGCGGCGTCTGCGCTGACCGTGTACTTGTCCGGCGGGCAGGGGCAGGTGGTAGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCAGTGGTGATTACGGCTGCTTCATTCGGAAACGCAGCGTACGAGAGGCTACCGGTGGAGGATGACGACGTGGAAGCGGCAACAGCGGCGGATGCCGGAAGTAGTCCGATCAGGTCACCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGATTGGCGCCGCATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGAGCACAGGTCGCACTCCACCATTTTAG 813 61.5 MDRATAAHGRPLPPPFISRNLHLNPHHHFLHQNSDQQHNGNSSSGGDGGRDGEVLRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIADASDVIETLTIFARKRQRGICVLTGAGAVTNVTLKQPGAAVAAAGPVISLPGRFEILSLSGSFLPPPAPAAASALTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVEAATAADAGSSPIRSPENAVQQQQFLPELHGLAPHLMNTCQLPTEPYWSTGRTPPF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2055573 2056385 - CePI673135_05g002510.1 Cec05g0251 202054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0251 270 MobiDBLite consensus disorder prediction 1 74 - -
Cec05g0251 270 Gene3D - 83 218 - -
Cec05g0251 270 FunFam AT-hook motif nuclear-localized protein 83 215 - -
Cec05g0251 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 199 IPR005175 -
Cec05g0251 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Cec05g0251 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 225 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cec05g0251 270 CDD DUF296 84 155 IPR005175 -
Cec05g0251 270 ProSiteProfiles PPC domain profile profile. 80 220 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0251 Cec-Chr5:2055573 Cec05g0299 Cec-Chr5:2458679 2.10E-57 dispersed
Cec05g0251 Cec-Chr5:2055573 Cec05g0259 Cec-Chr5:2132081 1.50E-15 proximal
Cec05g0251 Cec-Chr5:2055573 Cec06g0035 Cec-Chr6:362714 6.40E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0251 - - - 0.0