Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0256 ATGGTGCTCTTAAATGGAACCTCAGTTGCATCAGCTGCCTTCAGTAAGCTTTGCTTAGCTTTTCCTGAAAGAACGCAAGCAAGCAAGGCTGAGATGAGCTCGAGGCACAGCCGCGGAAGTTGCCCAGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAATTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCCGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGCTTCTACACATTCCTGAACACAAACGGCTCGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGCTGCAAGGTTGCAAGTAGAGATCTCGTATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCAAGCTTCACGGCCAAAGTTGCAGTCTCCCTTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGGGCAGCATTGATCAACAAATCGTCCAAAAACAACTGGCCTCAATGCAACACATTGGTGCCTCGCTATTTCCGTGCGTCCCCAAACGAGCCTAA 771 49.42 MVLLNGTSVASAAFSKLCLAFPERTQASKAEMSSRHSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAYLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSPLELSQIGSNSFPSMGSIDQQIVQKQLASMQHIGASLFPCVPKRA 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2098141 2102540 - CePI673135_05g002560.1 Cec05g0256 202059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0256 256 PANTHER LOB DOMAIN CONTAINING PROTEIN 45 168 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cec05g0256 256 Pfam Lateral organ boundaries (LOB) domain 49 147 IPR004883 -
Cec05g0256 256 ProSiteProfiles LOB domain profile. 48 150 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0256 Cec-Chr5:2098141 Cec07g0122 Cec-Chr7:1292853 5.40E-39 dispersed
Cec05g0256 Cec-Chr5:2098141 Cec06g0038 Cec-Chr6:382522 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29491 PF03195 LOB 1.90E-36 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0256 K21994 - csv:101216934 396.741