Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0259 ATGGAAGAGAGAGAAGCCATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACCGAGAACCCGCCGGCCGGCGCCGGTTCGCCAACCGTCGCTGCCTCGCCGGTAAGCGTGGGGCTGCCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAGTACGGCCCGGATGGAACGGTAACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCAGCCGGTGGCTTCTCCATTACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCCGAATTCAAACATCACAAGAAAATGGGAATGGAATATATAGGAGAGTGGAATGCATGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGCCCTCGAGCAATCTGTATTCTTTCTGCTAATGGAGTAATTTCGAATGTCACTCTTCGGCAGCCGGATTCTTCGGGTGGTACTTTAACATATGAGGGCCGTTTTGAAATACTTTCTTTATCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCTAGCCCTGATGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTTGGGAGTTTTCTACCAACTAGCCAACAGGAACAGAAGGTAAGGAAACAGAAGCCCGAGTCGGTACCAGCTGCAGCCCCTGTTGCAGTCCCGAGCACGGCACCAGCCACGACTGTGCCGGCTTCAAATGCAGATACAGATGACAGTTTAAATGGGAATGGTCTGCAAAATGCTGGGTCGTTAAAACCGGCTAGTTTCGCTCCTTCACCTTTCCAGAGAGACAATTGGGGTACCAATGCTACTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATTTCGCTGCCGGGCTAA 1026 52.24 MEEREAINAGVTVIGAEAPSAYHVAPRTENPPAGAGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVRKQKPESVPAAAPVAVPSTAPATTVPASNADTDDSLNGNGLQNAGSLKPASFAPSPFQRDNWGTNATVHSLQEPRNSATDINISLPG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2132081 2136228 + CePI673135_05g002590.1 Cec05g0259 202062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0259 341 ProSiteProfiles PPC domain profile profile. 126 266 IPR005175 -
Cec05g0259 341 MobiDBLite consensus disorder prediction 311 341 - -
Cec05g0259 341 MobiDBLite consensus disorder prediction 275 303 - -
Cec05g0259 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
Cec05g0259 341 CDD DUF296 131 244 IPR005175 -
Cec05g0259 341 MobiDBLite consensus disorder prediction 248 341 - -
Cec05g0259 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 286 IPR039605 GO:0003680(InterPro)
Cec05g0259 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 250 - -
Cec05g0259 341 MobiDBLite consensus disorder prediction 22 70 - -
Cec05g0259 341 Gene3D - 131 261 - -
Cec05g0259 341 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0352 Cec-Chr1:3658922 Cec05g0259 Cec-Chr5:2132081 1.90E-89 dispersed
Cec04g1122 Cec-Chr4:30785357 Cec05g0259 Cec-Chr5:2132081 3.60E-16 dispersed
Cec05g0259 Cec-Chr5:2132081 Cec11g0049 Cec-Chr11:632015 2.80E-75 dispersed
Cec05g0251 Cec-Chr5:2055573 Cec05g0259 Cec-Chr5:2132081 1.50E-15 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0259 - - - 0.0