Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0383 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCCATTCCGGCGCTGCCGATGGACGGGGGCGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGTGGCCCCGACAAGGCAACGCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCAACCGAGAACTCAAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCCTCGTCGTCGCCATCGTCGAGAATAATGACACAGGATCTGAATGATGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCTGCCGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACCGTTATGCCTCGAATAGGCAATTGCTCGATGGATAGCTGCCTGACATCAGCTGGTAGCCCAGTTTCCCCAATCAGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCGATGGCTCTCGAGGGCAATGCCCGACACGATGTCGAATGGATGATGAGTAATATTGGATGA 945 50.69 MLSGFSQEPAGMYSIPALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGNCSMDSCLTSAGSPVSPIRVGSTATAMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3124482 3128214 - CePI673135_05g003830.1 Cec05g0383 202186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0383 314 Gene3D - 48 107 - -
Cec05g0383 314 SUPERFAMILY Homeodomain-like 49 106 IPR009057 -
Cec05g0383 314 Pfam MYB-CC type transfactor, LHEQLE motif 147 192 IPR025756 -
Cec05g0383 314 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677(InterPro)
Cec05g0383 314 MobiDBLite consensus disorder prediction 112 138 - -
Cec05g0383 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 28 278 IPR046955 GO:0003700(InterPro)
Cec05g0383 314 FunFam Myb family transcription factor 48 106 - -
Cec05g0383 314 Coils Coil 204 224 - -
Cec05g0383 314 MobiDBLite consensus disorder prediction 113 138 - -
Cec05g0383 314 Pfam Myb-like DNA-binding domain 51 102 IPR001005 -
Cec05g0383 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0383 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1815 Cec-Chr4:36909216 Cec05g0383 Cec-Chr5:3124482 3.60E-45 dispersed
Cec05g0383 Cec-Chr5:3124482 Cec09g2389 Cec-Chr9:40654358 3.00E-39 dispersed
Cec05g0383 Cec-Chr5:3124482 Cec02g1969 Cec-Chr2:37533770 7.80E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g894 . . . . . Bpe14g00844 . . . . . Cma14g01894 Car06g01068 Car14g01696 . Cpe08g00397 Cpe03g01593 Bhi01g00235 . . . . . . . . . . . . . . . Cone7ag0390 . Lsi05g01838 . . Cme06g00381 . . . Bda13g00487 . . Bma02g01204 Bma06g01283 . Cmo06g01253 Cmo14g01946 . . . . . . . . . . . . . Cla05g00348 Cam05g0378 Cec05g0383 Cco05g0383 Clacu05g0372 Cmu05g0357 Cre05g0421 . Csa03g01095 Chy06g00365 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec05g1231 . 247 447 G2-like Transcription Factor Family AT5G16560 57.3 1.3e-44 177.6
Cec09g1158 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cec05g2157 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cec08g1594 . 54 140 G2-like Transcription Factor Family AT5G42630 85.1 2.6e-37 152.5
Cec05g2524 . 19 256 G2-like Transcription Factor Family AT1G25550 56.5 9.3e-53 204.1
Cec08g0536 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 6.0e-52 201.4
Cec03g0127 . 1 269 G2-like Transcription Factor Family AT3G46640 51.9 2.6e-62 236.1
Cec10g1667 . 5 185 G2-like Transcription Factor Family AT3G46640 50.4 4.9e-37 152.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 3.1e-74 275.4
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT5G05090 53.6 8.9e-69 257.3
Cec05g0383 . 12 314 G2-like Transcription Factor Family AT4G13640 57.7 8.6e-65 244.2
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec09g2389 . 1 381 G2-like Transcription Factor Family AT1G79430 55.1 1.7e-86 316.6
Cec02g1969 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cec05g0383 . 38 202 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cec04g1814 . 102 319 G2-like Transcription Factor Family AT2G01060 65.3 2.1e-53 206.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT3G10760 63.3 9.4e-92 334.0
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.7e-83 305.8
Cec04g0650 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29496 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Cec TF