Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g0386 | ATGGAGAAAGATGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGGTTCGACGAGGATGACGAACCTCCCGGTATCGACCCGGTCTACTTCCTGAAGTTCCCGGTTCTGCATAACGAGAGGGCGGAGGAGGCGGCGGCGGCCGGAGAGGAGGAAGCAGCGGAGACGGGAGGGAGATTAATTGTTGGGGAATTAGAAGAGGAGGATAATTTTAGGAATAATAATAATATTAATAATAACGTTAATAATAATAATAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACACATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTACGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTCTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTTGTACCGGGTAATTTTCCAGGTCAGCAAAACGAGGGGCAAATATTGGAAACGACAGCGGAGAGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCCTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGATAGCAAGCGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA | 1122 | 47.95 | MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLHNERAEEAAAAGEEEAAETGGRLIVGELEEEDNFRNNNNINNNVNNNNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLVQGADTPASQQPPFVPGNFPGQQNEGQILETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3162439 | 3167562 | - | CePI673135_05g003860.1 | Cec05g0386 | 202189 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g0386 | 373 | FunFam | Basic helix-loop-helix transcription factor | 166 | 241 | - | - | |
Cec05g0386 | 373 | SMART | finulus | 181 | 232 | IPR011598 | GO:0046983(InterPro) | |
Cec05g0386 | 373 | Pfam | Helix-loop-helix DNA-binding domain | 176 | 227 | IPR011598 | GO:0046983(InterPro) | |
Cec05g0386 | 373 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
Cec05g0386 | 373 | MobiDBLite | consensus disorder prediction | 11 | 27 | - | - | |
Cec05g0386 | 373 | Coils | Coil | 143 | 163 | - | - | |
Cec05g0386 | 373 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 175 | 226 | IPR011598 | GO:0046983(InterPro) | |
Cec05g0386 | 373 | MobiDBLite | consensus disorder prediction | 141 | 160 | - | - | |
Cec05g0386 | 373 | PANTHER | TRANSCRIPTION FACTOR FAMA | 102 | 365 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
Cec05g0386 | 373 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 175 | 245 | IPR036638 | GO:0046983(InterPro) | |
Cec05g0386 | 373 | CDD | ACT_UUR-ACR-like | 299 | 363 | - | - | |
Cec05g0386 | 373 | MobiDBLite | consensus disorder prediction | 139 | 178 | - | - | |
Cec05g0386 | 373 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cec05g0386 | 373 | Gene3D | - | 173 | 243 | IPR036638 | GO:0046983(InterPro) | |
Cec05g0386 | 373 | CDD | bHLH_AtFAMA_like | 178 | 246 | - | - | |
Cec05g0386 | 373 | ProSiteProfiles | ACT domain profile. | 299 | 373 | IPR002912 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g0002 | Cec-Chr5:62257 | Cec05g0386 | Cec-Chr5:3162439 | 1.10E-42 | dispersed | |
Cec05g0386 | Cec-Chr5:3162439 | Cec08g1161 | Cec-Chr8:23483568 | 1.10E-37 | dispersed | |
Cec05g0386 | Cec-Chr5:3162439 | Cec10g0170 | Cec-Chr10:1673160 | 1.30E-14 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29497 | PF00010 | HLH | 7.60E-10 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g0386 | K26213 | - | csv:101214530 | 586.645 |