Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0386 ATGGAGAAAGATGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGGTTCGACGAGGATGACGAACCTCCCGGTATCGACCCGGTCTACTTCCTGAAGTTCCCGGTTCTGCATAACGAGAGGGCGGAGGAGGCGGCGGCGGCCGGAGAGGAGGAAGCAGCGGAGACGGGAGGGAGATTAATTGTTGGGGAATTAGAAGAGGAGGATAATTTTAGGAATAATAATAATATTAATAATAACGTTAATAATAATAATAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACACATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTACGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTCTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTTGTACCGGGTAATTTTCCAGGTCAGCAAAACGAGGGGCAAATATTGGAAACGACAGCGGAGAGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCCTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGATAGCAAGCGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA 1122 47.95 MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLHNERAEEAAAAGEEEAAETGGRLIVGELEEEDNFRNNNNINNNVNNNNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLVQGADTPASQQPPFVPGNFPGQQNEGQILETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3162439 3167562 - CePI673135_05g003860.1 Cec05g0386 202189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0386 373 FunFam Basic helix-loop-helix transcription factor 166 241 - -
Cec05g0386 373 SMART finulus 181 232 IPR011598 GO:0046983(InterPro)
Cec05g0386 373 Pfam Helix-loop-helix DNA-binding domain 176 227 IPR011598 GO:0046983(InterPro)
Cec05g0386 373 MobiDBLite consensus disorder prediction 164 178 - -
Cec05g0386 373 MobiDBLite consensus disorder prediction 11 27 - -
Cec05g0386 373 Coils Coil 143 163 - -
Cec05g0386 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 226 IPR011598 GO:0046983(InterPro)
Cec05g0386 373 MobiDBLite consensus disorder prediction 141 160 - -
Cec05g0386 373 PANTHER TRANSCRIPTION FACTOR FAMA 102 365 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cec05g0386 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983(InterPro)
Cec05g0386 373 CDD ACT_UUR-ACR-like 299 363 - -
Cec05g0386 373 MobiDBLite consensus disorder prediction 139 178 - -
Cec05g0386 373 MobiDBLite consensus disorder prediction 1 27 - -
Cec05g0386 373 Gene3D - 173 243 IPR036638 GO:0046983(InterPro)
Cec05g0386 373 CDD bHLH_AtFAMA_like 178 246 - -
Cec05g0386 373 ProSiteProfiles ACT domain profile. 299 373 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0002 Cec-Chr5:62257 Cec05g0386 Cec-Chr5:3162439 1.10E-42 dispersed
Cec05g0386 Cec-Chr5:3162439 Cec08g1161 Cec-Chr8:23483568 1.10E-37 dispersed
Cec05g0386 Cec-Chr5:3162439 Cec10g0170 Cec-Chr10:1673160 1.30E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29497 PF00010 HLH 7.60E-10 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0386 K26213 - csv:101214530 586.645