Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0388 ATGGGTAGCGGAGAAAAGGTTTTCACCTTGAAGGAAGTCGCCGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAGGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAAGATGCAACCGACGACTTCGAAGACGTGGGCCACAGTGACAATGCAAGAGAGATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTCGCCTACACACCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAGGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCATACGCTTCTACACCAAACAAGCTTGA 405 46.91 MGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3177022 3179379 + CePI673135_05g003880.1 Cec05g0388 202191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0388 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cec05g0388 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cec05g0388 134 FunFam Cytochrome b5 type B 3 85 - -
Cec05g0388 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cec05g0388 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Cec05g0388 134 Gene3D - 2 86 IPR036400 -
Cec05g0388 134 PANTHER CYTOCHROME B5 5 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cec05g0388 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Cec05g0388 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cec05g0388 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cec05g0388 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cec05g0388 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0388 K23490 - - csv:101214209 274.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0020 Cec-Chr1:162483 Cec05g0388 Cec-Chr5:3177022 1.90E-46 dispersed
Cec05g0063 Cec-Chr5:665533 Cec05g0388 Cec-Chr5:3177022 4.40E-35 dispersed
Cec06g0285 Cec-Chr6:3204602 Cec05g0388 Cec-Chr5:3177022 1.00E-30 transposed
Cec06g0343 Cec-Chr6:3953754 Cec05g0388 Cec-Chr5:3177022 1.60E-09 transposed
Cec08g1076 Cec-Chr8:22598928 Cec05g0388 Cec-Chr5:3177022 2.30E-26 transposed
Cec11g0224 Cec-Chr11:2388326 Cec05g0388 Cec-Chr5:3177022 3.20E-15 transposed
Cec05g0388 Cec-Chr5:3177022 Cec06g0806 Cec-Chr6:9896161 3.30E-56 wgd
Cec05g0388 Cec-Chr5:3177022 Cec07g0236 Cec-Chr7:2358508 6.50E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0388 . 1 133 NADPH P450 reductases AT5G53560 67.7 3.2e-51 198.0
Cec01g0020 . 23 138 NADPH P450 reductases AT5G53560 77.6 2.1e-50 195.3
Cec06g0806 . 1 133 NADPH P450 reductases AT5G53560 63.2 5.3e-46 180.6
Cec05g0388 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.7e-47 185.7
Cec06g0806 . 1 133 NADPH P450 reductases AT5G48810 59.3 1.0e-44 176.4
Cec01g0020 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.0e-40 162.2
Cec05g0388 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cec06g0806 . 22 133 NADPH P450 reductases AT2G32720 76.8 2.6e-45 178.3
Cec01g0020 . 18 137 NADPH P450 reductases AT2G32720 64.2 3.3e-40 161.4
Cec04g0619 . 2 281 NADPH P450 reductases AT5G17770 81.1 3.3e-130 461.5
Cec10g1687 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cec02g2546 . 244 516 NADPH P450 reductases AT5G17770 72.9 2.1e-116 415.6
Cec05g0388 . 1 133 NADPH P450 reductases AT5G53560 67.7 3.2e-51 198.0
Cec01g0020 . 23 138 NADPH P450 reductases AT5G53560 77.6 2.1e-50 195.3
Cec06g0806 . 1 133 NADPH P450 reductases AT5G53560 63.2 5.3e-46 180.6
Cec05g0388 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.7e-47 185.7
Cec06g0806 . 1 133 NADPH P450 reductases AT5G48810 59.3 1.0e-44 176.4
Cec01g0020 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.0e-40 162.2
Cec05g0388 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cec06g0806 . 22 133 NADPH P450 reductases AT2G32720 76.8 2.6e-45 178.3
Cec01g0020 . 18 137 NADPH P450 reductases AT2G32720 64.2 3.3e-40 161.4
Cec04g0619 . 2 281 NADPH P450 reductases AT5G17770 81.1 3.3e-130 461.5
Cec10g1687 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cec02g2546 . 244 516 NADPH P450 reductases AT5G17770 72.9 2.1e-116 415.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156