Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0404 ATGCAATCGGCGATCATATCTCCTTCACCACGCGCCACCCCCTTCATCACAATTACACCATCTGTCTCTACCAATGTCCAACGAAACCGTCCCCTCGTCGTCAGAGCTTCCATTTCTAATGTCACTACGACATCTCCGCCGCCGTCGGTGTTTATAGACTCTCCATCTCCCAGTTCCACTACCTCTCAAAAGCTCAACAAGTACAGCTGTCGCATTACCGAGCCGAAGTCCCAGGGCGGCTCTCAGGCGATTCTCCACGGCGTTGGTCTTTCCGACGACGATCTCAACAAGCCTCAGATTGGGATTTCGTCGGTCTGGTATGAGGGAAATACATGCAATATGCATCTGTTGAAGCTCTCCGAGGCTGTCAAATATGGGGTTAAAGCAGCCGGCATGGTTGGCTTTAGGTTCAACACGATTGGCGTTAGTGACGCCATTTCCATGGGGACCAGAGGTATGTGCTATAGCTTGCAGTCAAGGGACTTGATTGCGGATAGCATCGAGACTGTCATGAGTGCTCAGTGGTACGACGGGAATATCTCCATCCCTGGCTGTGATAAGAATATGCCGGGTACAATTATGGCGATGGGTAGGCTGAATCGACCTAGTATTATGGTTTATGGTGGAACCATTAAGCCTGGTCATTTTCAAGGCCATACATATGACATAGTGTCTGCATTTCAGGTATATGGAGAATATGTAAGCGGGTCAATAAGTGATGAAGAGAGGAAGAATGTTGTTCGCAACTCCTGCCCGGGGGCTGGGGCTTGTGGTGGTATGTATACAGCTAATACTATGGCATCTGCTATTGAAGCTATGGGCATGTCTCTTCCTTACAGCTCGTCAACACCGGCTGAGGATCCACTGAAGATAGACGAATGCCGTTTGGCTGGAAAATATCTTCTGGAATTATTGAAGATGGATTTGAAACCACGGGATATTATTACGGAAAAATCACTACGAAATGCAATGGTTGTTGTTATGGCTTTGGGCGGTTCCACTAATGCAGTGCTACACTTGATTGCTATAGCAAGGTCTGTTGGTTTGGATTTAACCCTTGATGATTTTCAGAAGGTCAGCGATCAGGTTCCTTTACTTGCCGATCTTAAGCCTAGTGGAAAATATGTAATGGAGGACATTCACAAGATTGGAGGAACACCTGCAGTCATTCGCTATCTGTTGGAGCACGAACTTTTAGATGGAGATTGTATAACCGTCACGGGAAAGACGCTGGCTGAAAATGCTAAACTTTTCCTACCTCTATCTGAAGGGCAGGATATTATCAAGCCTGTGGAGAATCCCATCAAGAAAACAGGGCACCTTCAAATATTATACGGAAATCTTGCTCCTGAGGGTTCAGTAGCTAAGATTACTGGCAAGGAGGGGCTATATTTCTCTGGTCCTGCTCTTGTTTTTGAAGGTGAAGAATCGATGATTTCAGCTATAACAAAGGACCCCTCAAGTTTTAAGGGAAGAACAGTGATCATTAGAGGTGAAGGCCCAAAAGGGGGACCGGGAATGCCCGAAATGTTAACACCGACCAGTGCAATAATGGGGGCAGGTCTTGGGAAGGAAGTGGCATTGCTGACTGATGGTAGGTTCTCTGGAGGTTCACATGGCTTCGTGGTTGGTCACATCTGCCCTGAAGCGTTGGATGGCGGACCGATCGGGTTGGTTCAAAATGGTGATATCATCAATGTCGATGTCCAGAACCGAAGAATCGATGTTCAAATATCTGATCAAGAGATGGAAGAGCGAAGAAAGCACTGGAGTCCACCTGCGTATAAGGCTACTAGAGGCGTTCTTCACAAGCCGGTGCGACCCGACCCGGTTCGTAGCAGGGAACGGAGAGACGGTGGGTTTAGAGAAGGGAAGAAAGAGAATGGAGGTGATTGGATGGCCTCACCATCGTCTTCTTCGTCGTACTTGAATTCAACCTGTGGGCTTCTCGCTATTCTGGATTTGGACGAGAAACACGACGAGAGTATGAAGGAGGTGGAGGCTGAATGGATCATGGATGTTCCTGATACACCTGATCGGTTAGCTGCCCGACAAATTAATGGCGGACAGTTTGTTCAGACGGAGACTGATTCTTCTTTATCTAATCGTTTGAGAAACCCTGATTTCATGATGGAAAAGGGGATGAATGGCATGAAGGGAGTGGGGTTGCTTGCCAGTGAAAATGAGCATGATTTGAGATTAGATAGGAGTCCCAAAAATGTTCCTGGTGAGGATTTTAAGGGTCGTAAAAACACCATTATTCTTTCACCGGGAGAGAATCCTTATGCATTGCAAAATAATCTTTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATGTCAGGGGCCAAAACGTTTTATTTGCCCTCGCCGCGTGGATAAAGGGATAAATATATCTGTTGACTCTCCTTCCTCCAAACCACCTTCTTGTCAAGAAAATACTGCCATTCCACAAACGAGAGAACATGATCTTAAGTATAAACCTCAAACAGTTAGTCGTCATGTGGCTAAGGACTGTAAGATTGAGAACACATCGAATGAACAGTCTGCACGTTACATGCCAATTGCTTTAAAGAAACCCAACATGAACATTAAAGGGAAGGAAAAGGTTGTTGAGGAATCATTCCAAGATCTTGGTTTATCCATGATTCACAGAAAGGGAATTGAAAAATCCAATAACACCAGTAATCGCCACGAGAAGCAAGTTTTGGGTCCTCGTCAGTTTGCTAGTTCACCTAGAGCTACCGGACATAAAAGGTTGGTACGGAATGGTTGTATCTCACCCCATAATATTGCAATAAGAGCAAAAAGTTTATCTGATCAGTGTGAAAAGAGTTCTAGAGATGTTGACAAGAGCGATGTGGGGAACATGCCATCAAGCAGTCCATCTTGTCCGATAGATATAAATGATATAGTTGCTGAAGACAATTGTAGAAACAAAGATAAAGGAAAAGGGATCATGAGTCAACCTTCTATATCACATGATAACGATGATGTCAAAGTTATTTTTTCAACTAGCAGTGACATGGAAAAGGCTGTTGGAGTAAATCCAGCCAGAACTTCCAGATTAGGTACATCTGAATGTTGTGAGGAAGTAGGTGTTTGGAGAAGAACACATAATCATTCAAGGAAAGGGATTGTCTTGTCTAATCCACCTGGGAATTCTTTTAAGAAGATAGATAGTGTTGGAAGGCTTTCTAATGGAAAAACTGAGATTGTCATGGAGAGACAAATCCCTAGCAGGCAAGAACTCATACCAGAAACTGATTGTGCAGGAAATGCTGATACATCTCAAAGGGCTTCTAGCACTGTGCCCAAAACAGATCAGACTATTGGACCGATGCATGCTGAAAGCAAACTAAACAAAAAACAAAAGAAACATGGATCAACTTCACAAATCAATACTTCATCCCGCACTCCAGATGTCGTGTACCTTGGTACATCTGGGGAGTCTTCAAATTCAAGATCAACTAGACTGCAGAGTCAAAGAATTCATGATAATTTGAATGAAGTTATTGAGGTTGATGAGTTGTCACCTGAAATGAGACCCCCTGTTTCCCAGACTGTTGGTAGCTTAAATGATGACACCTCAGATGTTAGGGCAAGACAACTTGAAGCTGACGAGATATTGGCTCGTGAACTTCAGGAACAACTATATCAGGAGATGCCTATTGGAGGAGAAGAGATTGATGAACATTTAGCTATGGCACTGCAGCAGGTGGAACATGGCCTTCTTGCACCCTCCCGCCGGACTTACAATAGTCAGAGGGGCTCGTTAGTAGCACAGGCCAACAGACGCACTCGTTCTCAATCTTTACAAAACTCTTCTAATAGAATGCGGACTCGAGTAACCCACTCTGCAAGAATGGCACAGATGAGGAACCAATTTTTTGGTGGCTCTCATAGAGTGTCAACTAGACAAAGGAATGTTAATTTTCCTATGCATATGGATTTAGATATGAGACTTGATATATTGGAAGCTCTGGAGGCTGCAGTTGGAGATATGGAAGATGTGAGAACGAATAGGGACATCTTGCACATCCAGCGTGATTTCAACGAGAATGATTACGAGATGCTGCTATCCCTTGACGAGAACAATCACCGCCATGCTGGTGCATCTACTAACCGGATTAATAGTTTGCCACAATCTACGGTACAGGTAGGTGGCGGTTCTGCATCCCGTTTCCAGTTGCATTTTTCTTCTTTTGATCAAAAACTCATTCTCTGGACCACCAGATCTACTGGTTTAGCTGCTCTTGACAATTTGTTTCTTGTCTTCCTCAGACTGACAGCATGGAAGAAGCTTGTGCAATTTGTCTCGATACGCCAACCATTGGAGATGTCATTCGCCATCTACCTTGTTTACACAAATTTCATAAAGATTGTATTGATCCATGGCTACAGAGACGAACATCGTGCCCTGTTTGTAAGTGCTCAATCACTTGATGCTAAGGGTGATTTCGGGCTTATTACAAATCTGCACGCCCTTACTCTTTTGGGGAGCCAAGTCGGAAGCATAAGACTTCAAAGGTGCAATTCTCAGCCTGAACGAGTGGTGGAAGGATAA 4566 44.39 MQSAIISPSPRATPFITITPSVSTNVQRNRPLVVRASISNVTTTSPPPSVFIDSPSPSSTTSQKLNKYSCRITEPKSQGGSQAILHGVGLSDDDLNKPQIGISSVWYEGNTCNMHLLKLSEAVKYGVKAAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCDKNMPGTIMAMGRLNRPSIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEERKNVVRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSTPAEDPLKIDECRLAGKYLLELLKMDLKPRDIITEKSLRNAMVVVMALGGSTNAVLHLIAIARSVGLDLTLDDFQKVSDQVPLLADLKPSGKYVMEDIHKIGGTPAVIRYLLEHELLDGDCITVTGKTLAENAKLFLPLSEGQDIIKPVENPIKKTGHLQILYGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMISAITKDPSSFKGRTVIIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHICPEALDGGPIGLVQNGDIINVDVQNRRIDVQISDQEMEERRKHWSPPAYKATRGVLHKPVRPDPVRSRERRDGGFREGKKENGGDWMASPSSSSSYLNSTCGLLAILDLDEKHDESMKEVEAEWIMDVPDTPDRLAARQINGGQFVQTETDSSLSNRLRNPDFMMEKGMNGMKGVGLLASENEHDLRLDRSPKNVPGEDFKGRKNTIILSPGENPYALQNNLLLRKGGREKYSCQGPKRFICPRRVDKGINISVDSPSSKPPSCQENTAIPQTREHDLKYKPQTVSRHVAKDCKIENTSNEQSARYMPIALKKPNMNIKGKEKVVEESFQDLGLSMIHRKGIEKSNNTSNRHEKQVLGPRQFASSPRATGHKRLVRNGCISPHNIAIRAKSLSDQCEKSSRDVDKSDVGNMPSSSPSCPIDINDIVAEDNCRNKDKGKGIMSQPSISHDNDDVKVIFSTSSDMEKAVGVNPARTSRLGTSECCEEVGVWRRTHNHSRKGIVLSNPPGNSFKKIDSVGRLSNGKTEIVMERQIPSRQELIPETDCAGNADTSQRASSTVPKTDQTIGPMHAESKLNKKQKKHGSTSQINTSSRTPDVVYLGTSGESSNSRSTRLQSQRIHDNLNEVIEVDELSPEMRPPVSQTVGSLNDDTSDVRARQLEADEILARELQEQLYQEMPIGGEEIDEHLAMALQQVEHGLLAPSRRTYNSQRGSLVAQANRRTRSQSLQNSSNRMRTRVTHSARMAQMRNQFFGGSHRVSTRQRNVNFPMHMDLDMRLDILEALEAAVGDMEDVRTNRDILHIQRDFNENDYEMLLSLDENNHRHAGASTNRINSLPQSTVQVGGGSASRFQLHFSSFDQKLILWTTRSTGLAALDNLFLVFLRLTAWKKLVQFVSIRQPLEMSFAIYLVYTNFIKIVLIHGYRDEHRALFVSAQSLDAKGDFGLITNLHALTLLGSQVGSIRLQRCNSQPERVVEG 1521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3310532 3326742 + CePI673135_05g004040.1 Cec05g0404 202207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0404 1521 SUPERFAMILY LeuD/IlvD-like 441 603 - -
Cec05g0404 1521 MobiDBLite consensus disorder prediction 889 916 - -
Cec05g0404 1521 MobiDBLite consensus disorder prediction 604 629 - -
Cec05g0404 1521 MobiDBLite consensus disorder prediction 1257 1282 - -
Cec05g0404 1521 MobiDBLite consensus disorder prediction 604 638 - -
Cec05g0404 1521 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 185 195 IPR020558 GO:0003824(InterPro)
Cec05g0404 1521 FunFam Dihydroxy-acid dehydratase 440 590 - -
Cec05g0404 1521 Pfam Dehydratase family 97 604 IPR000581 GO:0016836(InterPro)
Cec05g0404 1521 Hamap Dihydroxy-acid dehydratase [ilvD]. 67 654 IPR004404 GO:0004160(InterPro)|GO:0009082(InterPro)
Cec05g0404 1521 MobiDBLite consensus disorder prediction 1127 1160 - -
Cec05g0404 1521 MobiDBLite consensus disorder prediction 1091 1109 - -
Cec05g0404 1521 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 527 538 IPR020558 GO:0003824(InterPro)
Cec05g0404 1521 NCBIfam dihydroxy-acid dehydratase 81 604 IPR004404 GO:0004160(InterPro)|GO:0009082(InterPro)
Cec05g0404 1521 SUPERFAMILY IlvD/EDD N-terminal domain-like 61 439 IPR037237 -
Cec05g0404 1521 PANTHER DIHYDROXY-ACID DEHYDRATASE DAD 56 606 IPR050165 GO:0004160(PANTHER)|GO:0009082(PANTHER)|GO:0009570(PANTHER)
Cec05g0404 1521 MobiDBLite consensus disorder prediction 1081 1160 - -
Cec05g0404 1521 MobiDBLite consensus disorder prediction 937 965 - -
Cec05g0404 1521 Gene3D - 440 590 IPR042096 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0404 K01687 - - csv:101205482 1296.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g860 . . . . . Bpe14g01299 . . . . Cma06g01261 Cma14g01879 Car06g01084 Car14g01681 . Cpe08g00385 Cpe03g01576 . . . . . . . . . . . . . . . . . Cone4ag0387 . . . Cme06g00401 . . . Bda13g00022 . . . . . Cmo06g01270 Cmo14g01927 . . . . . . . . . . . . . Cla05g00366 Cam05g0399 Cec05g0404 Cco05g0404 Clacu05g0394 Cmu05g0379 Cre05g0441 . Csa03g01120 Chy06g00388 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007213 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 2 1 37