Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0410 ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGAAGCAACTGGGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGACGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCCATTTCCATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATGCATGCTAG 1350 47.48 MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENEATGKLQSSSNSSMAVRLEEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHAC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3382931 3387580 + CePI673135_05g004100.1 Cec05g0410 202213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0410 449 SUPERFAMILY Pectin lyase-like 77 444 IPR011050 -
Cec05g0410 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cec05g0410 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cec05g0410 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cec05g0410 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cec05g0410 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cec05g0410 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cec05g0410 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cec05g0410 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cec05g0410 449 SMART amb_all 175 372 IPR002022 -
Cec05g0410 449 PANTHER PECTATE LYASE 18-RELATED 22 446 IPR045032 GO:0030570(InterPro)
Cec05g0410 449 Pfam Pectate lyase 186 364 IPR002022 -
Cec05g0410 449 FunFam Pectate lyase 100 442 - -
Cec05g0410 449 Gene3D - 100 442 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0410 Cec-Chr5:3382931 Cec09g2059 Cec-Chr9:37643072 2.30E-170 dispersed
Cec03g0324 Cec-Chr3:3676051 Cec05g0410 Cec-Chr5:3382931 3.00E-177 transposed
Cec08g1811 Cec-Chr8:29105402 Cec05g0410 Cec-Chr5:3382931 4.30E-173 transposed
Cec05g0410 Cec-Chr5:3382931 Cec06g0796 Cec-Chr6:9552578 8.40E-213 wgd
Cec05g0410 Cec-Chr5:3382931 Cec07g0213 Cec-Chr7:2141086 4.20E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0410 K01728 - csv:101218188 848.195