Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0431 ATGATGAATAATACCTGTATCAGTATTCCTCCATTGGCTCAGACCATTGATGGTGATCACTTCTTTGATCACCGGTGTATATGGGTCAATGGACCAGTGATCGTCGGAGCGGGACCATCTGGATTGTCAGTAGCGGCTGCTCTCAAACAACAAGGCGTCCCATTCGTGGTTGTCGACCGAGCTGACTGCATTGCCTCTCTTTGGCAACACCGGACCTATGATCGTCTCAAACTTCACCTTCCAAAGCAATTCTGTCAACTTCCCAACTTCCCTTTCCCAGAGGAGTTTCCTGCTTACCCCTCCAAGTTTCAGTTTATTTCCTACTTGGAATCCTATGCCAACCATTTTGATATCACCCCACGTTTCAATGAGACGGTACAGTCAGCCAAGTATGATGAAACTTTCGGCCTGTGGCGAGTCAAAACCCTTTCCTTGAGTCCCAAGCCGACCCAAGTCGAGTACATTTGCCGGTGGTTGGTCGTCGCCACGGGAGAAAATGCTGAGAAGGTTGTGCCAGAGTTTGAAGGGATGGAGGAGTTTGGTGGCCATGTCATGCATGCTTGCGAGTACAAATCTGGTGAGGCTTACCGTGGGAAACGGGTGCTTGTCGTCGGGTGCGGGAACTCCGGCATGGAAATTTCACTTGATCTTTGTAACCATGACGCCAAGCCATCCATGGTGGTACGAAGCTCGGTTCATGTATTGCCAAGAGAAATACTTGGAAAATCAACTTTTGAAGTAGCAATTTCACTAATGAAATGGCTGCCACTTCATATGGTGGACAAGATGCTGCTGATCATTTCCAGACTTGTTCTTGGGAACATTGAGAAGTATGGACTCAAAAGGCCATCAATGGGACCTTTGCAGCTTAAGAACGCAGCCGGGAAGACACCCGTGTTGGATATCGGAGCGCTGCAGAAGATAAGGGCCGGCGAGATCAAGGTGGTGCCCGGAATTAAAAAATTCCGGCGAGGTGCAGTGGAGCTGGTCAATGGAGAAGTTCTAGAGATTGATTCTGTAATTCTAGCTACTGGCTATCGCAGCAATGTTCCATCTTGGCTCAAGGAAAATGAGTTCTTTTCCAGTGATGGGATTCCAAAAAGTCCATTCCCAAATGGGTGGAAAGGCAAAGCTGGACTCTATGCTGTTGGGTTCACAAGAAAAGGCTTATCAGGAGCTTCATTGGACGCCATTAATGTAGCTCAGGACATTGCCAAGAGCTGGAAAGAAGATACTAAACAGAAGAGAAAATCAGTGGCAGCTCGCCATAGAAGATGCATTTCACATTTCTAG 1293 47.64 MMNNTCISIPPLAQTIDGDHFFDHRCIWVNGPVIVGAGPSGLSVAAALKQQGVPFVVVDRADCIASLWQHRTYDRLKLHLPKQFCQLPNFPFPEEFPAYPSKFQFISYLESYANHFDITPRFNETVQSAKYDETFGLWRVKTLSLSPKPTQVEYICRWLVVATGENAEKVVPEFEGMEEFGGHVMHACEYKSGEAYRGKRVLVVGCGNSGMEISLDLCNHDAKPSMVVRSSVHVLPREILGKSTFEVAISLMKWLPLHMVDKMLLIISRLVLGNIEKYGLKRPSMGPLQLKNAAGKTPVLDIGALQKIRAGEIKVVPGIKKFRRGAVELVNGEVLEIDSVILATGYRSNVPSWLKENEFFSSDGIPKSPFPNGWKGKAGLYAVGFTRKGLSGASLDAINVAQDIAKSWKEDTKQKRKSVAARHRRCISHF 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3512387 3514174 - CePI673135_05g004310.1 Cec05g0431 202234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0431 430 PRINTS Pyridine nucleotide disulphide reductase class-II signature 31 53 - -
Cec05g0431 430 PRINTS Pyridine nucleotide disulphide reductase class-II signature 196 220 - -
Cec05g0431 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 32 51 - -
Cec05g0431 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 156 174 - -
Cec05g0431 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 200 218 - -
Cec05g0431 430 SUPERFAMILY FAD/NAD(P)-binding domain 33 232 IPR036188 -
Cec05g0431 430 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 29 416 IPR050982 GO:0004497(PANTHER)|GO:0009851(PANTHER)|GO:0050660(PANTHER)
Cec05g0431 430 Gene3D - 31 416 IPR036188 -
Cec05g0431 430 Pfam Flavin-binding monooxygenase-like 34 351 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Cec05g0431 430 FunFam Flavin-containing monooxygenase 32 413 - -
Cec05g0431 430 SUPERFAMILY FAD/NAD(P)-binding domain 196 409 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0431 K11816 - - csv:101221268 865.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0431 Cec-Chr5:3512387 Cec08g0336 Cec-Chr8:8164146 4.10E-92 dispersed
Cec06g0922 Cec-Chr6:12554346 Cec05g0431 Cec-Chr5:3512387 6.20E-138 transposed
Cec08g1273 Cec-Chr8:24723047 Cec05g0431 Cec-Chr5:3512387 7.40E-150 transposed
Cec08g1335 Cec-Chr8:25305233 Cec05g0431 Cec-Chr5:3512387 9.10E-145 transposed
Cec05g1233 Cec-Chr5:11562932 Cec05g0431 Cec-Chr5:3512387 2.80E-92 transposed
Cec05g0431 Cec-Chr5:3512387 Cec06g0133 Cec-Chr6:1307083 3.20E-185 wgd
Cec05g0431 Cec-Chr5:3512387 Cec07g0188 Cec-Chr7:1946403 8.70E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g812 Blo01g00310 . . Bda08g00015 . . . . . . Cma06g01281 Cma14g01858 Car06g01100 Car14g01664 . Cpe08g00368 Cpe03g01556 Bhi01g00033 . . . . . . . . . . . . . . Cone15ag0211 . . Lsi05g01787 . . Cme06g00434 . . . . Bpe05g01121 . . . . Cmo06g01287 Cmo14g01903 . . . . . . . . . . . . . Cla05g00392 Cam05g0426 Cec05g0431 Cco05g0431 Clacu05g0422 Cmu05g0404 Cre05g0466 . Csa03g01149 Chy06g00414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000555 4 3 5 3 5 3 6 3 3 3 3 3 6 3 3 6 3 3 6 3 3 3 3 3 3 3 3 5 3 2 108