Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0438 ATGGACTCAGGGTTCTGCGCCGCCCATCTCTCTCAGCTTCTAGGCCCCAACACAACCAACGCCACCGCCGCTGCTAATTTCATCTGCGATCAGTTCACCACCGTCACCAACAACTTCTCCGACACCAAAAATGCCCTCGACAACACCTACCTTCTCTTCTCCGCCTACCTTGTCTTTTCTATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAAAACACAATGAACATCATGCTCACCAATGTCCTCGACGCCGCTGCCGGCGGCCTCTTTTATTACCTTTTCGGCTACGCCTTCGCCTTCGGCTCCCCGTCCAATGGCTTCATCGGCCGCCATAACTTCGGTCTCACCTCCTTTCCGACCTCCACTGCCGATTACAGCTTCTTCCTCTATCAATGGGCCTTTGCGATCGCTGCCGCCGGGATTACCAGTGGATCTATCGCCGAGCGGACTCAGTTTGTCGCCTATTTGATTTATTCCTCTGTTTTGACTGGATTCGTTTATCCGGTGGTTTCTCACTGGTTCTGGTCTCCCGATGGTTGGGCTGGGGTTATGAAATCGGATGGCGGACTGTTGTTCGGATCGGGAGTTATCGACTTCGCCGGCTCCGGCGTCGTTCATATGGTTGGGGGAGTTGCTGGTCTATGGGGCGCGTTGATCGAGGGGCCGAGAATCGGTCGATTCGACCACACCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCTTCTTTAGTCGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCGCGAAGATTCTCGTCCCTTACACCACCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGACGGACGGCGGTCACCACCACGCTCGCCGGATGCACGGCGGCACTCACCACGCTCTTCGGGAAGCGATTCCTCTCAGGGCACTGGAACGTGACGGACGTTTGTAACGGGCTCCTTGGGGGCTTCGCCGCCATCACCGCCGGCTGTTCCGTCGTCGAGCCATGGGCAGCAATCATCTGCGGATTCGTCGCCGCTCTCGTGCTAATAACCTGCAACCGAATCGCAGAGAAAGCAAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGCGGGTGCGGCGCGTGGGGAGTTATATTCACAGCACTCTTCGCAACGAAGGAGTACGTAACGGAAGTATACGGCGGATCGGGGCGTCCGTACGGCCTCCTGATGGGCGGCGGGGGGAGGTTACTGGCAGCGCATTTGGTACAGATTTTGGTGATCGTGGGGTGGGTGAGCGCAACGATGGGGCCATTGTTCTTTGTTCTTCACAAATTGAAGCTTCTGAGAATCTCCTCTGAAGATGAAATGGCGGGAATGGATCTGACCCGCCATGGCGGATTTGCGTACATTTATCACGATGAAGATGAAGCCCAGAAAATGGGGATTCAGTTGAACAGAGTAGAACCAAAATCTGCGACTCCAACCGGAGATTATTGA 1503 56.22 MDSGFCAAHLSQLLGPNTTNATAAANFICDQFTTVTNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHNFGLTSFPTSTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGGLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAALVLITCNRIAEKAKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVTEVYGGSGRPYGLLMGGGGRLLAAHLVQILVIVGWVSATMGPLFFVLHKLKLLRISSEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSATPTGDY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3574430 3575932 - CePI673135_05g004380.1 Cec05g0438 202241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0438 500 NCBIfam ammonium transporter 47 471 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec05g0438 500 FunFam Ammonium transporter 28 486 - -
Cec05g0438 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec05g0438 500 SUPERFAMILY Ammonium transporter 44 452 - -
Cec05g0438 500 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Cec05g0438 500 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec05g0438 500 PANTHER AMMONIUM TRANSPORTER 20 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0438 Cec-Chr5:3574430 Cec11g1057 Cec-Chr11:19959240 5.00E-206 dispersed
Cec06g0779 Cec-Chr6:9167682 Cec05g0438 Cec-Chr5:3574430 1.20E-239 transposed
Cec05g0438 Cec-Chr5:3574430 Cec07g0181 Cec-Chr7:1859245 5.30E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0438 K03320 - csv:101208366 912.138