Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0449 ATGGGCACGCCCTTTCACATTCCGGTCACTGCTGCTCAGGTGGGAACATACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCTATTCCGATGCCAGTACTATGATTCGTATTGATGGCAATTTCAGAGAGACCGCCACTGCAATGCTGCAAATACATGCACTTGTTATGTCACTTAGTTATACCGGGATTGAGATCAAGACCGCACATTCACTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGCTCTGTTCAAATGAAGAATCTCAATCGAATGAGAAAGTTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTCCACCATTATCCAGCAGTCTTATTAAGTCAGAGCAATCTGGATTCCACCTTAAATGCTCCTACCACAGTTCCAGAGACAGTGCCCAATTACTCACTTAATGGAGCAGTACAGACACGAGAGTTTGCAGCCCCTGTTGTCAAAGAAAATGGTCATATCGATAACCATAAGTTTGTAGAGCAGCAAGTGCAGCAAGTTTCAGAGCCTAAAAGCATTATTGAGGAAAATACAGCAGAAGTAAATTCTATGCATCAGAACACATCAACTGGTTCACAAGATCATTTTCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCATACATATGCTTCAATTCTAAGAGTTGCTAAAGGACAAGATGTTCCTGCCGCCATTGTTACTCCTCAATATCCTGTTAGTAAGGAGACACCACCTGCTTCAGAGCAAAACTACACTCCACCTCCCACCAGTCAGCAAGTAACTTCAGCTCCCCAAAATAACTCTGAAAGGGAACAGACAGGAGGGGAGTTCCCTTCTATTGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACTTGCCATCCACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCATTTTGGCAAACTTAGTTCCGATGGAGTGGTTATTAGGAGTCGCAAGGATGTTGGTTTCTGCTATGCGTTTGTCGAATTTGAAGACATCACTGGTGTCCAAAATGCTATCAAGGCGGGTACTGCCCAGGTTGCTGGACGTCAAGTATACATTGAGGAGCGGAGAGCAAACAGCAACATCCCACACCGAGGAGGAAGAAGGGGTAGAGGAAGAGGGAGCTATCACACCGAGTCTTCGAAGGGACATTATAATTCTCGTAGTTACAGTTACAGTATGGGAGTTCGAGATGGAAGCGACCGTGAGTACATCAGACCAAGGGGCAACGGCTTCTATCGACCTACTTCGTGA 1356 44.17 MGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRETATAMLQIHALVMSLSYTGIEIKTAHSLESWNGGVLVMVSGSVQMKNLNRMRKFVQTFFLAPQEKGYFVLNDIFHFVDEEPVHHYPAVLLSQSNLDSTLNAPTTVPETVPNYSLNGAVQTREFAAPVVKENGHIDNHKFVEQQVQQVSEPKSIIEENTAEVNSMHQNTSTGSQDHFPVSVEEHAEEPQKHTYASILRVAKGQDVPAAIVTPQYPVSKETPPASEQNYTPPPTSQQVTSAPQNNSEREQTGGEFPSIDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGFCYAFVEFEDITGVQNAIKAGTAQVAGRQVYIEERRANSNIPHRGGRRGRGRGSYHTESSKGHYNSRSYSYSMGVRDGSDREYIRPRGNGFYRPTS 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3658434 3661378 - CePI673135_05g004490.1 Cec05g0449 202252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0449 451 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 8 425 IPR039539 GO:0003729(PANTHER)|GO:0005829(PANTHER)|GO:1990904(PANTHER)
Cec05g0449 451 CDD RRM_SF 317 388 - -
Cec05g0449 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723(InterPro)
Cec05g0449 451 FunFam Nuclear transport factor 2 family protein 5 132 - -
Cec05g0449 451 Pfam RNA recognition motif 317 383 IPR000504 GO:0003723(InterPro)
Cec05g0449 451 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Cec05g0449 451 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Cec05g0449 451 MobiDBLite consensus disorder prediction 413 428 - -
Cec05g0449 451 CDD NTF2 10 130 IPR018222 -
Cec05g0449 451 Gene3D - 284 443 IPR012677 -
Cec05g0449 451 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Cec05g0449 451 MobiDBLite consensus disorder prediction 268 302 - -
Cec05g0449 451 Gene3D - 7 132 - -
Cec05g0449 451 MobiDBLite consensus disorder prediction 395 451 - -
Cec05g0449 451 MobiDBLite consensus disorder prediction 265 312 - -
Cec05g0449 451 SUPERFAMILY RNA-binding domain, RBD 313 420 IPR035979 GO:0003676(InterPro)
Cec05g0449 451 SMART rrm1_1 316 388 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0449 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0449 Cec-Chr5:3658434 Cec06g1757 Cec-Chr6:31112794 6.30E-43 dispersed
Cec05g0449 Cec-Chr5:3658434 Cec06g0147 Cec-Chr6:1481208 5.60E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37