Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0451 ATGGCCGCCGCCGCCACCGGAGCCTCATTCTTCACCACTCTCATAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTCCTCTCAACCCCATCCACCCAAGTTTTGCCCATATTGTCCCGCTCTCTGGCCATTGAATCGGCTCCGCTCAGAGCTTTCTCGGAGAGGTGGCGGCCGGTTCTGTTCATATCGGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGCAGGGGTTGAAGAGGGAGTGGAGGAGGAGACGGCGGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCCGGGAGTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCCCAGCTCGCCGCTATTGTCCAGGATTATGGTGTCGCGGAGCTTATCGAGGTTCTGTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGTATTGAAGATTGCCATAAAGTCATTGAAAATCTGGATGGAACTGCTTACATGGGAAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAAGTTTGACACAAGCATTTCAAGAATATGGAAATGTGATAGGAGCAAGGGTTATTTATAACGGGGAGACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAGCAGGCACAGGGGTCAATGTAG 852 48.71 MAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRPVLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCHKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQGSM 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3663882 3666293 - CePI673135_05g004510.1 Cec05g0451 202254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0451 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723(InterPro)
Cec05g0451 283 PANTHER OS02G0815200 PROTEIN 56 277 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Cec05g0451 283 SUPERFAMILY RNA-binding domain, RBD 191 279 IPR035979 GO:0003676(InterPro)
Cec05g0451 283 CDD RRM2_NsCP33_like 199 274 IPR048289 -
Cec05g0451 283 SUPERFAMILY RNA-binding domain, RBD 102 189 IPR035979 GO:0003676(InterPro)
Cec05g0451 283 FunFam 28 kDa ribonucleoprotein, chloroplastic 189 280 - -
Cec05g0451 283 SMART rrm1_1 199 272 IPR000504 GO:0003723(InterPro)
Cec05g0451 283 SMART rrm1_1 108 181 IPR000504 GO:0003723(InterPro)
Cec05g0451 283 Pfam RNA recognition motif 109 178 IPR000504 GO:0003723(InterPro)
Cec05g0451 283 Pfam RNA recognition motif 200 270 IPR000504 GO:0003723(InterPro)
Cec05g0451 283 Gene3D - 71 187 IPR012677 -
Cec05g0451 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723(InterPro)
Cec05g0451 283 Gene3D - 188 283 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0451 Cec-Chr5:3663882 Cec10g1836 Cec-Chr10:33173085 3.80E-38 dispersed
Cec10g1255 Cec-Chr10:26667294 Cec05g0451 Cec-Chr5:3663882 5.50E-06 dispersed
Cec05g0451 Cec-Chr5:3663882 Cec09g0385 Cec-Chr9:3314749 2.90E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28