Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0471 ATGGCGTTATCCCTTCTTCGAGCTGTGGCTTCCGCCTCCACCTCCACTGCCCGCCTCTCTCTTCTTCACAGACGCCTCTTCTCCTCCTCAACTACTCTTACACATCCTCCTTCACCCCCTTCTCTCATTCTCTGCCGTCGATCTCTCCCTCCGCTTTCTCATGCCGTTCGATCCATCCCTTCCGCCTCCAGGTTAACCTCGAGTCGTTGCCACGTCAATCGCTCAGGTAACTCGTCTTACTCTCCCCTTAACTCTAATTCCAACTTCAGTGATCGTCCTCCCACTGAGATGGCGCCTCTTTTCCCTGGATGTGACTATGAGCACTGGCTCATTGTCATGGACAAGCCTGGTGGTGAGGGTGCCACCAAGCAGCAGATGATCGATTGCTACATTCAGACCCTCGCTAAAGTTGTTGGCAGTGAAGAGGAAGCGAAGAAGAGGATTTATAATGTTTCTTGTGAGAGGTATTTTGGGTTTGGGTGTGAGCTTGACGAAGAGACCTCCAACAAGCTCGAAGGCTTGCCAGGTGTTCTGTTTGTTCTTCCTGATTCTTATGTCGACCCTGAGTATAAAGACTATGGGGCTGAGTTGTTGGTGAATGGAGAGATTGTTCAAAGGTCACCAGAGAGACAGAGAAGGGTGGAACCACAGCCTCAGAGAGTTCAGGATAGACCAAAGTATACCGACAGGACCCGCTATGTGAGACGCAGAGAAAACATGAGGCGCTTCCCCAACTTACAACTCTCCTCACTAACAATGGCAGCTTCCGTAGTCTTCGGCTTCGGCTTCACGCCGGCCACTTCTTCCGGTGTAATTGCACCCTCCTCAACCAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAACCACTCGCTAATCTCCACCTCTCCCATTTCTACTGCTCCTCTCACACCTGCCCTTCAACCTGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAGCTACGTTTGTCAACTAAGGCTTTGAAAACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGA 1212 48.93 MALSLLRAVASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLILCRRSLPPLSHAVRSIPSASRLTSSRCHVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELLVNGEIVQRSPERQRRVEPQPQRVQDRPKYTDRTRYVRRRENMRRFPNLQLSSLTMAASVVFGFGFTPATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3779105 3784820 + CePI673135_05g004710.1 Cec05g0471 202274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0471 403 Hamap Large ribosomal subunit protein bL28 [rpmB]. 325 401 - -
Cec05g0471 403 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 20 241 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Cec05g0471 403 MobiDBLite consensus disorder prediction 67 92 - -
Cec05g0471 403 Pfam Multiple organellar RNA editing factor 1, MORF domain 106 196 IPR054059 -
Cec05g0471 403 Pfam Ribosomal L28 family 328 387 IPR026569 GO:0003735(InterPro)
Cec05g0471 403 NCBIfam 50S ribosomal protein L28 328 383 IPR001383 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cec05g0471 403 SUPERFAMILY L28p-like 328 400 IPR034704 -
Cec05g0471 403 FunFam Multiple organellar RNA editing factor 103 187 - -
Cec05g0471 403 FunFam 50S ribosomal L28, chloroplastic 327 403 - -
Cec05g0471 403 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 104 187 IPR037045 -
Cec05g0471 403 Gene3D Ribosomal protein L28/L24 327 403 IPR037147 GO:0003735(InterPro)
Cec05g0471 403 MobiDBLite consensus disorder prediction 207 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0471 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0471 Cec-Chr5:3779105 Cec06g0495 Cec-Chr6:5564901 5.70E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g749 . . . . . Bpe14g01271 . . . . . Cma14g01829 . Car14g01641 . . Cpe03g01532 Bhi01g00705 . . . . . . . . . . . . . Cone14ag0166 Cone15ag0176 . . . . . Cme06g00470 . . . Bda13g00047 . . Bma02g00759 . . . Cmo14g01870 . . . . . . . . . . . . . Cla05g00426 Cam05g0463 Cec05g0471 Cco05g0472 Clacu05g0460 Cmu05g0439 Cre05g0500 . Csa03g01188 Chy06g00452 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005046 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 41