Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0482 ATGGGAGGGGGCAAGCAGGTCGATATCACCGTTGACGACATTAGCCTCAAGGACCTCTCGTCGAAGCTCGAGGAGTTTGCCAAGGCCAGAAATTGGGAGAAGTATCATAGTCCTAGAAACCTTCTCCTTGCCATGGTAGGAGAAGTAGGAGAGCTATCAGAAATATTCCAATGGAGAGGGGAAGTGGAGAAAGGGCTGCCAGATTGGGAGGAATCAGATAAAGAGCATCTTGGGGAAGAACTTTCTGATGTGTTGCTTTATCTCATCAGATTGGCTGATATTTGTGGAATCAATCTCCCTGATGCTGCTGCTAAGAAGCTTGTTAAGAACTCCATCAAATACCCAACTCAACTCCTCTAG 360 46.67 MGGGKQVDITVDDISLKDLSSKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGEVEKGLPDWEESDKEHLGEELSDVLLYLIRLADICGINLPDAAAKKLVKNSIKYPTQLL 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3868815 3869598 - CePI673135_05g004820.1 Cec05g0482 202285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0482 119 CDD NTP-PPase_RS21-C6_like 22 110 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
Cec05g0482 119 PANTHER - 11 117 - -
Cec05g0482 119 Pfam MazG-like family 48 115 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
Cec05g0482 119 PIRSF UCP029826_pph 6 119 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
Cec05g0482 119 Gene3D - 6 118 - -
Cec05g0482 119 SUPERFAMILY all-alpha NTP pyrophosphatases 12 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0482 K16904 - - csv:101207880 216.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0482 Cec-Chr5:3868815 Cec09g0801 Cec-Chr9:7441419 3.80E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g731 Blo01g00274 Blo12g00152 Bda03g01076 . Bpe04g00999 . Bma04g00990 Bma05g01219 . . . Cma14g01820 . Car14g01632 . . Cpe03g01524 Bhi01g00714 . . . Hepe05g1666 . . . . . . . . . Cone14ag0159 Cone15ag0170 . . Lsi05g01743 . . Cme06g00479 . . Bda11g00639 . Bpe05g01074 Bpe13g00550 . Bma06g01606 . . Cmo14g01860 . . . . . . . . . . . . . Cla05g00435 Cam05g0473 Cec05g0482 Cco05g0482 Clacu05g0470 Cmu05g0448 Cre05g0510 . Csa03g01197 Chy06g00461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011640 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30