Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0501 ATGGATTACTCTGGATTCTTCTCCCCGGTTTCCGATTTCTCCTCCGAATCATCGTTCGGTTCACCAGAATCATCCTTCATGAATTTGGACTACAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTATGGCCTAATCTCCGAGGGGACACAGGATTCCTCCGACAACAGTATCGGAACGGCGCGAGTGAAGGAAGAGGAAGTCGATTCGATCGGTGAAGAAAGCCCAAAGAAGGAGAGGGCTTACAGGGGAGTTCGCCGCCGGCCATGGGGCAAATTTGCGGCGGAAATTAGAGATTCTACTAGACATGGTATAAGGGTATGGTTAGGAACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCTTACGATCAAGCCGCCTTTTCAATGAGGGGTGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTTAGGGAGTCTCTCAAAGAAATGAATTGCAGTGGCGGCGGCAGTGATAGTATAGCTGAGGACGGCGGCTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCGATTAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAGAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGGGCACTTCTCAAAGTGGTAGCCCTTGTTCTTTCTAA 681 48.16 MDYSGFFSPVSDFSSESSFGSPESSFMNLDYNFLPFNENDSEEMLLYGLISEGTQDSSDNSIGTARVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGSDSIAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLGTSQSGSPCSF 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3996755 3997435 - CePI673135_05g005010.1 Cec05g0501 202304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0501 226 MobiDBLite consensus disorder prediction 63 84 - -
Cec05g0501 226 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0501 226 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677(InterPro)
Cec05g0501 226 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0501 226 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0501 226 MobiDBLite consensus disorder prediction 8 23 - -
Cec05g0501 226 PANTHER DNA-BINDING DOMAIN 59 185 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cec05g0501 226 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Cec05g0501 226 CDD AP2 86 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0501 226 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0501 226 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0501 226 MobiDBLite consensus disorder prediction 1 23 - -
Cec05g0501 226 MobiDBLite consensus disorder prediction 54 84 - -
Cec05g0501 226 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0501 Cec-Chr5:3996755 Cec06g0707 Cec-Chr6:8106583 6.30E-68 dispersed
Cec05g0501 Cec-Chr5:3996755 Cec05g0502 Cec-Chr5:4021026 5.60E-16 tandem
Cec05g0501 Cec-Chr5:3996755 Cec06g0172 Cec-Chr6:1728157 2.10E-15 wgd
Cec05g0501 Cec-Chr5:3996755 Cec06g0706 Cec-Chr6:8054940 1.90E-19 wgd
Cec05g0501 Cec-Chr5:3996755 Cec07g0130 Cec-Chr7:1377182 3.50E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29504 PF00847 AP2 2.60E-14 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0501 K14516 - csv:101210326 352.829