Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0505 ATGAAGATCATGGTCGCCATTAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGCGTTGAGACCCAGAATGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCCCTGCGTATCAAGGAGGCTGGCTTCGCCTCTGAGGTTGTGGCGGTCAGCATGGGTCCGGCTCAGTGCGTCGACACTCTCAGGACGGGCCTAGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTCTCTGTTGCTAAGCTTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAACCAAACCGGGCAGATGATTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCGAAGGTTGTGATAGACAAGGAGAAGCAGGCAGTGACAGTGGACAGAGAAGTGGATGGTGGTCTTGAGACCCTCTGTTTGGACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAATCAAAACCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCTAGATTTAGAGGTCGTTGAAGTTACGGAACCTCCAAAAAGAAAAGCGGGTATCATATTGTCATCTGTTGATGAACTGATTGACAAACTCAAAAATGAAGCTCATGATTTCTGTTTCCCCTCCTTCATAGCTATTGAATGTCCTTGTTTCGGTTCTTGTTTGAGCTTTTGGTTTGCTTTTGCTTTTTACTTACTCGAACAATGTGGGACTGCAGTATGCTATTGGATGGGCTGTGATTTTAGGGGTGCGGCGGTGGACGACGCTTTCATTCCAGATCAGATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTTGATTGCTCCTTCTTCGTCGACGGTGACAATCTTATTAACACTTCGCTCGATCCTTTGTGGCAGCCTAATGATTCTAGGGATAGTTGTGCGGAGACTGATGTTTCAGCTGGGCGTGTTGAGTCTGAAGAAAACGAGTGTTCGCGTAAGAGGGCACGAGATGGGTCGTGCGCTGGACCAACTTCGAAAGCTTGTCGCGAGAGGTTGCGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGATTGTTAAATCAACTTAAGAATGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTACGAGAAGAAGTGGAGTGTTTAAAGGAAGAGAAGAATGATCTTCGGAAAGAGAAAATCATTCTGAAGGAAGACAAAAAACGAATCGAACAACAGTTGAAATCTGTAGCCGTTCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTCTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG 1599 46.4 MKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGFASEVVAVSMGPAQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKLLKALVEVEKPGLLLLGKQAIDDDCNQTGQMIAGLLNWPQGTFASKVVIDKEKQAVTVDREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKLDLEVVEVTEPPKRKAGIILSSVDELIDKLKNEAHDFCFPSFIAIECPCFGSCLSFWFAFAFYLLEQCGTAVCYWMGCDFRGAAVDDAFIPDQMDPLEDSSCWDFLDCSFFVDGDNLINTSLDPLWQPNDSRDSCAETDVSAGRVESEENECSRKRARDGSCAGPTSKACRERLRREKLNDRFLDLSIALEPSRPTKTNKPAILDDAIRLLNQLKNEAEDLKQTNEKLREEVECLKEEKNDLRKEKIILKEDKKRIEQQLKSVAVPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWQYLPPSVRDTSQDHELRPPAA 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4045552 4053044 + CePI673135_05g005050.1 Cec05g0505 202308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0505 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 377 428 IPR011598 GO:0046983(InterPro)
Cec05g0505 532 Pfam Helix-loop-helix DNA-binding domain 381 429 IPR011598 GO:0046983(InterPro)
Cec05g0505 532 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 157 177 IPR000049 GO:0009055(InterPro)
Cec05g0505 532 Gene3D - 380 457 IPR036638 GO:0046983(InterPro)
Cec05g0505 532 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 244 - -
Cec05g0505 532 Coils Coil 418 473 - -
Cec05g0505 532 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 1 248 IPR012255 GO:0005739(PANTHER)|GO:0009055(InterPro)|GO:0009055(PANTHER)|GO:0009063(PANTHER)|GO:0033539(PANTHER)
Cec05g0505 532 CDD bHLH_AtILR3_like 382 457 - -
Cec05g0505 532 Pfam Electron transfer flavoprotein domain 26 207 IPR014730 -
Cec05g0505 532 SMART finulus 383 434 IPR011598 GO:0046983(InterPro)
Cec05g0505 532 SMART ETF_2 23 213 IPR014730 -
Cec05g0505 532 CDD ETF_beta 2 205 IPR033948 -
Cec05g0505 532 Gene3D HUPs 1 249 IPR014729 -
Cec05g0505 532 FunFam Electron transfer flavoprotein subunit beta 1 250 - -
Cec05g0505 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 380 447 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0495 Cec-Chr3:5212254 Cec05g0505 Cec-Chr5:4045552 1.80E-20 dispersed
Cec05g0505 Cec-Chr5:4045552 Cec10g0552 Cec-Chr10:6727668 1.20E-27 dispersed
Cec05g0505 Cec-Chr5:4045552 Cec05g1652 Cec-Chr5:27116955 2.10E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29507 PF01012 ETF 2.10E-44 CL0039 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0505 K03521 - csv:101210570 464.536