Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0518 ATGGAGCCAAACAGCATTCTACAAGAGAAAGTCAAGAAGGTTCGATCCGCGGTCGGGCCCGACTTGCCGGATTCCTTCATTCAACGGACGCTGTTGACAAGCGACGGTGACATAGACGAGGCTATTAAATACATTCTTCAAAACCCTGGGTTTTTGGCCAGGCCATTGTCTGTTGTACGGACGGTCACTAGCACCGGTGCTCGAGTTTCAACACAGTTCATGCAGGATGATTCTATGGAGTCCGAGGAGGTAGCGAAACCGACGGTACAAGTCAAGGAGGAATCGGGTTTCGGGTTTGAAGATAAAGGCATAGAGAACAGGGGAGTGAGCTCGGATCGTCCAGAGGGTTTGCCAAAGGCCATCAGAACGTGGGAAACGAGATTCGATGAGTTTCTTAAACAGACAAACACGAAAGTGATGAGCGATGAGAAGTATAGCAAGATCCCTGAGGGAAATCCGGCTGCGAAGATTCAAGTAAAGGAGGAAGCAGTTGAGACGAATGCACAACCTGGTGCTAACACAAATGTGAGAGTAAAAGAAGAACCAGATTTGGAGTTTAAGAACAGAGTATTTGCAAGAGAAGCAAGCTCTAGGACTGAATATTTCGCAAAGTCGGTTTCAAGTACACCAAGAACGAATTCGGTGGGTTCAGATGGCATGCAGAAGAATGGGACCTTGTCTAATGATGGGAGGTGCAAGATTGACGATGGGGATTTCCCTATTGAGCCTGATTGGTTTTTGGTGGGAAGGACAGTGGTCACAGCCATGTCCACCACGAAAGGGGATAAATTAGCAGATAATGAACTAGTTAATTTTGCATTTCCTTCTTCAAATTCAAGATTCAATGCGCAATGGATTGTTCGCTTCTCAACTAAAAGAAGTGGAGAGATTGGTCGCTTACCAATGGGGTGGGCAAAATGTGTAGTTCCACTTGTCGACTCCCGGAAAGTTAAAATTCTTGGACGGTGTATAGCCGCACCAGGAAACCTTCACATAATGCAAGAAATCCTTCTATACGTTAGCTTTTATATCCATAGTTCGGTATTCTCGGACATTGATACAGTTACATGGACGTTGGAGGCTACACACATTGACTCTACAATTTATCCTCTTCTTACCCTTTTCGAATTACTGAAAATCACACCGTACCAGAAGGCTGAATTTACACCAGAAGAACTTGATTCAAGGAAGCGTCTGCTGAAGCTTGAAGACGATCCTGATGAAGCGGCATCAATGCTACCTATTGTGAAGCGGAGAAAGGGTTCCCAGCAATTTGCCGATCAAAACAAAGATGACCAAACTCTTAATGAATCATCACTGACTAAGCTTGTTGGTGCTTCAGATATGTATAATTTGGATGAAATGGAGCCTCCACGTACACTGACATGTGATCTTAGGCCTTATCAGAAGCAAGCTCTATTCTGGATGTCTGAGTTAGAGAAGGGGATCAAGGTTGAGAAGGCTGCACAAACCCTTCATCCATGCTGGTCAGCCTATCGCATCTGTGATGAGAGAGCCTCCTCAATCTATGTAAACATTTTCTCTGGGGAATCAACTACAAAATTCCCAACTGCAACACAGATGGCAAGAGGAGGAATTCTTGCGGATGCAATGGGGCTTGGAAAGACCGTTATGACAATTGCTCTTATACTTGCGAGGATGGGCAAAGGATGCCCTAATGACCAAAAGCCAGCAGTGAATAAGAATGTTACCACAGAGACAAAAAGTCAGAAATCCACAACTAAAGCTAGGGGTGGAACCCTTATTGTATGTCCAATGGCTTTGCTGGGCCAATGGAAGGAGGAGCTTGAAATACATTCAGAGCCTGAAAGTATTTCCATATTTGTTCACTATGGTGGTGATAGAACCAACAATCCAGAGGTGCTGTCAGGATATGATGTTGTCTTGACAACGTATGGTGTCCTAACATCGGCCTATAAGAGTGATGGAGAGTTCAGTATTTACCACAGAGTTGATTGGTACAGAGTGGTGCTAGATGAAGCCCATACAATTAAATCATCAAAGACACAAACTGCCCAGGCTGCTTTTACACTGAACTCATATTGCCGGTGGTGTCTTACGGGAACCCCCCTCCAGAATAACTTGGAAGACCTTTTCAGCCTCTTATGCTTCTTGCGTGTGGAACCATGGTGCAATTGGGCATGGTGGAACAAGTTGATTCAAAGGCCTTATGAAAATGGTGATCCTAGAGGCTTGAGATTGATCAAGGCTATCCTGAGGCCACTTATGTTGAGGAGAACTAAAGATACAAAGGATGCAGAAGGAAGGCCTATTCTTGTTCTCCCTCCTACTGATATTCAAACCGTCACATGTGGACAGTCTAAGGCTGAACGTGATTTTTATGATGCACTTTTTAAGAGATCAAAAGTCCAGTTTGATCAGTTTGTAGCACAAGGAAAGGTTCTCCACAACTATGCAAACATCCTCGAGCTCTTGCTTCGACTTAGGCAGTGTTGCAACCACCCATTTCTTGTAATGAGTAATTCTACAACAATGGAGCAGGCTGCACCGACCAGAGCATATGTTGAAGAGGTAGTTGAGTGCATTCGGCGAGGTGAAAACACCGAGTGCCCAATATGTATGGAGTTTGCCGACGATGCAGTGCTCACCCCATGTGCTCACAGGATGTGTAGGGAATGTCTCCTCTCAAGCTGGAGGACCCCGACATGTGGGCTCTGCCCAATTTGTAGGCAATTGGTGAAGAAAACTGACCTCATAACATGTCCATCAGAAAACCCTTTTCGTGTGGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAAGTATCAAAACTGCTGGAATGCTTGGAACAAATTAATCAGTCGGGTTCTGGTGAAAAGAGCATTGTTTTTAGCCAGTGGACTACATTTTTTGATCTCTTAGAGATTCCCTTGAAGAGGAAACGAATTGGATTCTTCAGATTCGATGGGAAACTGTCGCAGAAGCATAGGGAAAGAGTTCTAAAAGAGTTCAGTGAAAGCAAGGAGAAAAAGGTGATGCTAATTTCTCTAAAAGCTGGTGGGGTTGGATTGAATCTAACCGCAGCTTCAAATGTCTTCATAATGGATCCATGGTGGAATCCTGCGATTGAGGAACAAGCAATCACGAGGATCCATCGTATTGGTCAGAAGAGGACAGTCCGTGTGAGAAGATTCATTGTCAAGGACACCGTGGAGGAACGCATGCAACAAGTTCAGGCCAGAAAGCAGCGGATGATCGCCGGTGCCCTCACTGACGAGGAAGTTCGAACGGCCAGGATTGAAGAGCTCAAGATGCTCTTTAGATAG 3306 44.95 MEPNSILQEKVKKVRSAVGPDLPDSFIQRTLLTSDGDIDEAIKYILQNPGFLARPLSVVRTVTSTGARVSTQFMQDDSMESEEVAKPTVQVKEESGFGFEDKGIENRGVSSDRPEGLPKAIRTWETRFDEFLKQTNTKVMSDEKYSKIPEGNPAAKIQVKEEAVETNAQPGANTNVRVKEEPDLEFKNRVFAREASSRTEYFAKSVSSTPRTNSVGSDGMQKNGTLSNDGRCKIDDGDFPIEPDWFLVGRTVVTAMSTTKGDKLADNELVNFAFPSSNSRFNAQWIVRFSTKRSGEIGRLPMGWAKCVVPLVDSRKVKILGRCIAAPGNLHIMQEILLYVSFYIHSSVFSDIDTVTWTLEATHIDSTIYPLLTLFELLKITPYQKAEFTPEELDSRKRLLKLEDDPDEAASMLPIVKRRKGSQQFADQNKDDQTLNESSLTKLVGASDMYNLDEMEPPRTLTCDLRPYQKQALFWMSELEKGIKVEKAAQTLHPCWSAYRICDERASSIYVNIFSGESTTKFPTATQMARGGILADAMGLGKTVMTIALILARMGKGCPNDQKPAVNKNVTTETKSQKSTTKARGGTLIVCPMALLGQWKEELEIHSEPESISIFVHYGGDRTNNPEVLSGYDVVLTTYGVLTSAYKSDGEFSIYHRVDWYRVVLDEAHTIKSSKTQTAQAAFTLNSYCRWCLTGTPLQNNLEDLFSLLCFLRVEPWCNWAWWNKLIQRPYENGDPRGLRLIKAILRPLMLRRTKDTKDAEGRPILVLPPTDIQTVTCGQSKAERDFYDALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSNSTTMEQAAPTRAYVEEVVECIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPICRQLVKKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEKKVMLISLKAGGVGLNLTAASNVFIMDPWWNPAIEEQAITRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRTARIEELKMLFR 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4142392 4148124 + CePI673135_05g005180.1 Cec05g0518 202321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0518 1101 SUPERFAMILY RING/U-box 861 914 - -
Cec05g0518 1101 Pfam Zinc finger, C3HC4 type (RING finger) 861 909 - -
Cec05g0518 1101 CDD CUE 20 46 - -
Cec05g0518 1101 CDD SF2_C_SNF 932 1059 IPR049730 -
Cec05g0518 1101 Pfam CUE domain 20 48 IPR003892 GO:0043130(InterPro)
Cec05g0518 1101 CDD DEXDc_SHPRH-like 465 753 - -
Cec05g0518 1101 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 173 1100 IPR050628 GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0008094(PANTHER)
Cec05g0518 1101 Gene3D - 769 1101 IPR027417 -
Cec05g0518 1101 SMART helicmild6 965 1048 IPR001650 -
Cec05g0518 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 753 IPR027417 -
Cec05g0518 1101 MobiDBLite consensus disorder prediction 203 229 - -
Cec05g0518 1101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 857 913 IPR013083 -
Cec05g0518 1101 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 715 IPR014001 -
Cec05g0518 1101 Pfam Helicase conserved C-terminal domain 936 1048 IPR001650 -
Cec05g0518 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1091 IPR027417 -
Cec05g0518 1101 SMART HIRAN_2 248 344 IPR014905 GO:0003676(InterPro)|GO:0008270(InterPro)|GO:0016818(InterPro)
Cec05g0518 1101 SMART ultradead3 461 732 IPR014001 -
Cec05g0518 1101 CDD RING-HC 863 903 - -
Cec05g0518 1101 MobiDBLite consensus disorder prediction 203 228 - -
Cec05g0518 1101 ProSitePatterns Zinc finger RING-type signature. 879 888 IPR017907 -
Cec05g0518 1101 Gene3D - 519 754 IPR038718 -
Cec05g0518 1101 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 934 1101 IPR001650 -
Cec05g0518 1101 SMART ring_2 864 903 IPR001841 -
Cec05g0518 1101 ProSiteProfiles Zinc finger RING-type profile. 864 904 IPR001841 -
Cec05g0518 1101 MobiDBLite consensus disorder prediction 419 438 - -
Cec05g0518 1101 FunFam DNA repair protein RAD5B 520 754 - -
Cec05g0518 1101 Pfam SNF2-related domain 468 830 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cec05g0518 1101 ProSiteProfiles CUE domain profile. 6 50 IPR003892 GO:0043130(InterPro)
Cec05g0518 1101 Pfam HIRAN domain 249 340 IPR014905 GO:0003676(InterPro)|GO:0008270(InterPro)|GO:0016818(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0518 K15505 - - csv:101214691 1935.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1357 Cec-Chr1:27151672 Cec05g0518 Cec-Chr5:4142392 6.50E-285 dispersed
Cec02g0923 Cec-Chr2:12126640 Cec05g0518 Cec-Chr5:4142392 1.30E-84 dispersed
Cec04g1989 Cec-Chr4:38089252 Cec05g0518 Cec-Chr5:4142392 2.70E-88 dispersed
Cec05g0518 Cec-Chr5:4142392 Cec11g0589 Cec-Chr11:6468825 1.00E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0310 Cone4ag0312 Lsi05g01699 . . Cme06g00516 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00464 Cam05g0505 Cec05g0518 Cco05g0519 Clacu05g0506 Cmu05g0482 Cre05g0546 . Csa03g01237 Chy06g00490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec02g0923 . 79 873 RAD5/RAD16-like Gene Family AT1G05120 59.2 1.1e-269 926.4
Cec04g1989 . 288 1231 RAD5/RAD16-like Gene Family AT1G11100 52.5 7.6e-244 840.9
Cec01g0807 . 230 1008 RAD5/RAD16-like Gene Family AT1G11100 51.2 1.7e-203 706.8
Cec01g0807 . 11 908 RAD5/RAD16-like Gene Family AT1G50410 53.8 1.3e-246 849.7
Cec04g1989 . 401 1132 RAD5/RAD16-like Gene Family AT1G50410 50.7 4.7e-191 665.2
Cec04g1989 . 392 1231 RAD5/RAD16-like Gene Family AT1G61140 61.0 7.6e-271 930.6
Cec01g0807 . 195 1010 RAD5/RAD16-like Gene Family AT1G61140 53.7 1.9e-229 793.1
Cec01g1357 . 1 1039 RAD5/RAD16-like Gene Family AT5G22750 70.4 0.0e+00 1449.1
Cec05g0518 . 244 1100 RAD5/RAD16-like Gene Family AT5G22750 54.6 4.2e-284 974.5
Cec05g0518 . 233 1101 RAD5/RAD16-like Gene Family AT5G43530 70.5 0.0e+00 1283.9
Cec01g1357 . 128 1038 RAD5/RAD16-like Gene Family AT5G43530 54.6 2.8e-285 978.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014742 0 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 19
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29508 PF00176 SNF2_N 8.60E-82 CL0023 Cec TR