Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0542 ATGGCTTTATTACACAGTCGTTTATGCCATGCCACGAACTTCTTCGACACATTTCAAACTTCCTTCTCTGAATTCCATGGCTCTCAAGTTTTACTGAAGTGCGGTTCGTCGATTGTCTTCAGAAACCGCTCTTTCTGCTCTCCGTTTTATGCTTTCACCACCGATACATTTTCCAATCGAATTTCGTATGGGAGTTTAGGTTCACGAAAACCCATTTCCCGATATAGTTTTGGGAGAAATCTATGTCGTGCTAGTTGGATAGATAGGTGGAACGAAACCGCGAAAGAGAATCGCCCGAAACCACCTCGGGCTGTGTTGGATTATCCCAGTAGCGATGACAACGAAGTTTCAATTTCAAGTTCATCGAGGAGTTATAGAGATGGTAGTCGGATTGATGATGATGGAAGAGAGGGAAGTACAATGGAGAAGATTGTGAGGAAATTGAAGAAATTTGGGTACATGGACGATGAGAATAAAGAGAAGGGGCAAGAGAGAGCCATCGAAAAAGGGTCTGTGGAGGACATATTTTATGTTGAGGAAGGAATGTTGCCTAATACTCGAGGTGGGTTTTCTGAGGAATCGCCTCTGGGAGATGAGAACATGTTTGGAAGTAATGGGGAAGTTAGGTTTCCATGGGAGAAGCCAAAGGAAAAGGAAGACGGAGATGGGGATTCAACTAGGAGAAGGGGCAGGACATCTTTGGCAGAATTAACCCTTCCTGAGCCAGAATTGAGAAGGCTGAGGAACTTGACTTTCCAGAAAAAGCACAAGATGAAGATAGGCGGTGGAGGAGTGACTCAGGCTGTTGTGAATGTCATTCATGAAAAATGGAAATCTTCAGAAATTGTGAGGCTTAAAATTGAAGGTCCTCCTGCACTTAACATGAAAAGGATGCACGAGATATTGGAGAGAAAAACTGGTGGACTGGTTATCTGGAGGTCGGGAACTTCATTGTCTCTATATAGAGGTGTAAGCTATGAGCTTCCTGAAGCACCACAATTTAACAAATGGATTTACAAGAGAAATATGATCACTACTTTGTCTGGAACTGGTGGCAGTGCTATAGTTCCTTCTGAATATTCTTCTCACGGTCATGTATATGAGTTGCAACGGAAAAGAGCAGAAACTTCCACAGATGGTGAACAGTGCAGCGAACAATTGACAGAAGTACAAGTGAATTATGAGGATGAAGTAGATAAGTTACTGGATAGTTTGGGTCCAAGATACACAGACTGGCCAGGATTGGATCCTTTACCCGTTGATGCAGATTTGCTCCCAGGAGTAGTTCCTGATTATGAACCTCCATTTAGAATACTTCCCTATGGAGTGAGATCTTCTCTTGGAGTTAAGGAGGCTACAGCCTTAAGACGACTTGCCAGAAGACTTCCTCCTCATTTTGCCCTAGGCAGAAACAGGCAGCTGCAAGGTTTAGCCATTGCAATGGCCAAATTGTGGGAACGAAGTTCAATTGCAAAAATCGCCCTGAAACGAGGTGTGCAGCTGACTACTAGCGAGAGAATGGCTGAAGAGATCAAGAAATTGACAGGAGGCATTCTTCTGTCAAGAAACAAAGACTTTCTGGTATTCTATAGAGGAAAGAGTTTCTTGTCGCCTGAGGTCACTGAAGCTTTGCTAGAAAGGGAGAGGCTGGCAAAGTCTCTACAAGATGAAGAAGAACAGGCTAGGTTGAAAGCGTCAGCCTTGGTGGTACCTGGCATTGAGAAAACAGAGCAATCTGGAACCGCAGGTTCTCTAGAGGAAACACTAGATGCCGATGCTAAATGGGGAAAGCCTCTAGATGATGAGCACAAGGAAAAAGTAATGCAGGAAGCTGAACGATTGAGGCACACTGACCTAGTCAGGAAGTTGGAACGGAAGCTTGCTTTTGCTGAAAGAAAATTAGTGAAAGCTGAACAAGCATTATCTAAGGTAGAAGCATTTATGACACCGGCAAAGCTGGCTGCACCTGATAGCATAACTGAGGAGGAAAGATTTATGTTTCGTAAGCTTGGTCTACGAATGAAAGCTTTCTTGCTTCTAGGTAGGCGTGAAGTTTTTGATGGCACAGTGGAGAACATGCACTTGCATTGGAAGTATCGTGAATTGGTGAAGATCATGATAAAAGCTAATTCCTTTGATCATGTCAAAAAAATTGCTTTGCAACTCGAAGCTGAGAGTGGAGGTGTCCTAGTTTCTATTGACAAAGTCTCCAAAGCATATGCTATAATCGTTTATCGAGGAAAGGATTATCAACGGCCATCTTTGCTGAGACCCAAGAATCTTTTGACAAAGAGGAAGGCTCTAGCACGCTCGATCGAGCTTCAAAGGCACGAGGCTTTGCTGAAACATATATCAGCAATGCAGAGTAGAGTGGACAAACTAAAATCCGAAATCGAACAAATGGAGAAAGTGAAAGACCGAGGAGATGAAGTATTATACAATACACTGGATTCTGCTTATCCTACCGACAACGATTCAGAGGAAGAAGATTACGGTACATATACCGAGGCATATGGTCAGAGTAGTGAAGTTGAAGATGAAGATAATATCATGGCTATCGATGAGTACCTGGAAGGGGATTTTCCACATGGAATCCAAGTACAAGAATCTGAGGTCGAATATGAGACATCTGAATCACGTCACATATAG 2649 43.19 MALLHSRLCHATNFFDTFQTSFSEFHGSQVLLKCGSSIVFRNRSFCSPFYAFTTDTFSNRISYGSLGSRKPISRYSFGRNLCRASWIDRWNETAKENRPKPPRAVLDYPSSDDNEVSISSSSRSYRDGSRIDDDGREGSTMEKIVRKLKKFGYMDDENKEKGQERAIEKGSVEDIFYVEEGMLPNTRGGFSEESPLGDENMFGSNGEVRFPWEKPKEKEDGDGDSTRRRGRTSLAELTLPEPELRRLRNLTFQKKHKMKIGGGGVTQAVVNVIHEKWKSSEIVRLKIEGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKWIYKRNMITTLSGTGGSAIVPSEYSSHGHVYELQRKRAETSTDGEQCSEQLTEVQVNYEDEVDKLLDSLGPRYTDWPGLDPLPVDADLLPGVVPDYEPPFRILPYGVRSSLGVKEATALRRLARRLPPHFALGRNRQLQGLAIAMAKLWERSSIAKIALKRGVQLTTSERMAEEIKKLTGGILLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDEEEQARLKASALVVPGIEKTEQSGTAGSLEETLDADAKWGKPLDDEHKEKVMQEAERLRHTDLVRKLERKLAFAERKLVKAEQALSKVEAFMTPAKLAAPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKKIALQLEAESGGVLVSIDKVSKAYAIIVYRGKDYQRPSLLRPKNLLTKRKALARSIELQRHEALLKHISAMQSRVDKLKSEIEQMEKVKDRGDEVLYNTLDSAYPTDNDSEEEDYGTYTEAYGQSSEVEDEDNIMAIDEYLEGDFPHGIQVQESEVEYETSESRHI 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4332931 4337028 - CePI673135_05g005420.1 Cec05g0542 202345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0542 882 FunFam CRM-domain containing factor CFM3B, chloroplastic 658 760 - -
Cec05g0542 882 SUPERFAMILY YhbY-like 659 756 IPR035920 -
Cec05g0542 882 ProSiteProfiles CRM domain profile. 445 542 IPR001890 GO:0003723(InterPro)
Cec05g0542 882 FunFam CRS2-associated factor 1, chloroplastic 446 542 - -
Cec05g0542 882 Coils Coil 540 560 - -
Cec05g0542 882 MobiDBLite consensus disorder prediction 95 139 - -
Cec05g0542 882 Coils Coil 777 811 - -
Cec05g0542 882 SUPERFAMILY YhbY-like 447 538 IPR035920 -
Cec05g0542 882 SUPERFAMILY YhbY-like 238 327 IPR035920 -
Cec05g0542 882 MobiDBLite consensus disorder prediction 210 231 - -
Cec05g0542 882 MobiDBLite consensus disorder prediction 204 236 - -
Cec05g0542 882 ProSiteProfiles CRM domain profile. 657 757 IPR001890 GO:0003723(InterPro)
Cec05g0542 882 FunFam CRS2-associated factor 1, chloroplastic 238 333 - -
Cec05g0542 882 Coils Coil 613 647 - -
Cec05g0542 882 Gene3D - 658 760 IPR035920 -
Cec05g0542 882 Gene3D - 446 542 IPR035920 -
Cec05g0542 882 Gene3D - 237 336 IPR035920 -
Cec05g0542 882 ProSiteProfiles CRM domain profile. 237 333 IPR001890 GO:0003723(InterPro)
Cec05g0542 882 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 75 840 IPR045278 GO:0000375(InterPro)|GO:0003729(InterPro)
Cec05g0542 882 Pfam CRS1 / YhbY (CRM) domain 241 322 IPR001890 GO:0003723(InterPro)
Cec05g0542 882 Pfam CRS1 / YhbY (CRM) domain 659 746 IPR001890 GO:0003723(InterPro)
Cec05g0542 882 Pfam CRS1 / YhbY (CRM) domain 450 531 IPR001890 GO:0003723(InterPro)
Cec05g0542 882 SMART CRS1_YhbY_2 447 531 IPR001890 GO:0003723(InterPro)
Cec05g0542 882 SMART CRS1_YhbY_2 239 322 IPR001890 GO:0003723(InterPro)
Cec05g0542 882 SMART CRS1_YhbY_2 659 746 IPR001890 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0542 K27708 - - csv:101216848 1443.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1610 Cec-Chr3:34208031 Cec05g0542 Cec-Chr5:4332931 6.10E-151 dispersed
Cec05g0542 Cec-Chr5:4332931 Cec06g1682 Cec-Chr6:30402870 4.90E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30