Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0553 ATGGAGACGGCGCTCCGGCCAACGCTCGCCGCAGCTCCACCTTCCACCGGCGCCACCCTTCTCGGAAAGTACCAATTAGGCCGCCTTCTCGGTCGCGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAACTCCACCGTTGCCATCAAAATCATCGACAAATCCAAAACGGTCGGCGCCGCTCTTGAACATTGCATAGTCCGAGAGGTCGCCGCCATGCGCCGCCTCGATCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGCGGCGAACTCTTCGCCAAAATTTCCCGCCGCGGGCGATTCACCGAACCCGTCGCCCGCCGGTACTTCCAACAACTCGTCTCAGCCCTCAAGTTCTGCCACGAAAACGGCGTCGTTCACCGCGATGTGAAGCCGCAGAATCTTTTGCTGGACCAACAGGGCAATCTGAAAATCTCCGATTTCGGCCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTGCTCCACACGGCTTGTGGAACTCCAGCGTACTCAGCGCCGGAGGTCATGATCCGGCGCGGTGGCGGCGGATACGACGGTGGAAAGGCCGACGCCTGGTCTTGTGGAGTGATTTTATTCGTATTGCTCTCTGGGTTTCTCCCTTTCGACGACAGTAACCTAGCGGGGATGTACAAGAAAATCCACCGGCGAGAATTTCAAATCCCTAGTTGGATATCGAAACCGGTCCGATTCCTAATATATCATCTCCTCGATCCGAATCCCAAAACGAGAATGAGCATTGATACGTTAATGCAAAACCCCTGGTTCAAGAAATCGCTGCAATTGAAACAGAGTACTGAAAGTTTATTGCAACCGATGAGGGATTATCGATTGGGGACAGAGATGGGAACTAGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGGCGGAGAAAAGGGCGGAGAGGAGGTTTACGTCGAGGGCGACGGTGATGGAGGTGGAGGAGAGGGTGAAGGAGATGGGCGGAGAGTTGGGGTACGAGGTGGAGGCGGGGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTGGTGGTGGAAGTGGTGAAGGTGGCGGTGGCTCCGGTGACATTGACGATGGTGGAGGTGAGGGTGGTGAAAGGAGGGGAGGAGTTCGACCATTGGAGGTGTTTTGAAGGTAAACTTGAAGGATTTGCAGTTCCATGGCAGAGGAAATGTAATATGTGA 1308 54.74 METALRPTLAAAPPSTGATLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAIKIIDKSKTVGAALEHCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELFAKISRRGRFTEPVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDQQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMIRRGGGGYDGGKADAWSCGVILFVLLSGFLPFDDSNLAGMYKKIHRREFQIPSWISKPVRFLIYHLLDPNPKTRMSIDTLMQNPWFKKSLQLKQSTESLLQPMRDYRLGTEMGTREMNAFDIISMSSGLDLSGLFETAEKRAERRFTSRATVMEVEERVKEMGGELGYEVEAGAKGGAIGMGKGRVVVVVEVVKVAVAPVTLTMVEVRVVKGGEEFDHWRCFEGKLEGFAVPWQRKCNM 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4456209 4457516 - CePI673135_05g005530.1 Cec05g0553 202356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0553 435 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g0553 435 SMART serkin_6 24 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g0553 435 Pfam NAF domain 312 367 IPR004041 GO:0007165(InterPro)
Cec05g0553 435 Pfam Protein kinase domain 24 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g0553 435 Gene3D Transferase(Phosphotransferase) domain 1 110 302 - -
Cec05g0553 435 FunFam Non-specific serine/threonine protein kinase 15 305 - -
Cec05g0553 435 Gene3D Kinase associated domain 1, KA1 308 424 - -
Cec05g0553 435 FunFam Non-specific serine/threonine protein kinase 17 109 - -
Cec05g0553 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g0553 435 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Cec05g0553 435 CDD CIPK_C 314 416 - -
Cec05g0553 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 358 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cec05g0553 435 SUPERFAMILY Protein kinase-like (PK-like) 21 308 IPR011009 -
Cec05g0553 435 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165(InterPro)
Cec05g0553 435 Gene3D Phosphorylase Kinase; domain 1 26 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0553 Cec-Chr5:4456209 Cec06g1412 Cec-Chr6:27645482 1.40E-92 dispersed
Cec03g0989 Cec-Chr3:17586952 Cec05g0553 Cec-Chr5:4456209 9.40E-07 transposed
Cec05g0553 Cec-Chr5:4456209 Cec06g0664 Cec-Chr6:7473477 1.00E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71982 PF00069 Pkinase 2.00E-68 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0553 K12761 - csv:101217555 707.212