Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0578 ATGAAAACTTTAAGCTCCCCTCTCTCAAAATCTCTCTTCCTCATCTCCATCCTCATCCTCCTCTCCCAACCTTCCCATCAAGCAACTCCGTCACCGACGCCATTTCTCCCAAACCCCAGACTTCTTAAGGCCTACTCCGCTCTCCAAGCTTGGAAACATGCCATCACCGCCGACCCGACCAACTTCACCTCCGATTGGTACGGCCCCAATGTCTGCAACTACTCCGGTGTCTTCTGCGCCCCCGCCCCCGACGACCCCGACATCCTCACCGTCGCCGGGATCGACCTAAACCACGCCAACGTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTCACCGACCTTGCTCTGTTCCACATCAACTCCAATCACTTCTGCGGCACTATCCCTAATTCCTTCCGGTGCCTCACTCTTCTCTTCGAGCTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTCTCTCTCCCAGCTCTCAAATTCCTCGATATTCGATTCAACAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACTTGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAAATTTTCCCTACCGGAAAATATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGTCTCCCCTCTAGTTTATCCAATATGAACAACACACTCAATGAAATTATAATCACGAATAGTGGGTTGATTGGGTGTTTACCGCCGGAAATTGGGTCTTTGAGCAATCTCACCGTCTTCGATGTTAGTGACAACAATCTCATCGGACCGTTGCCGGAGACGATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAGATTCCAGCGAGTATTTGTTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCGCTGCAACGTTCGCCGGAGGGATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGGTGTACTCGTCGGCCGCCACGACCGCCGCCTCCGCCGCCATCTTATTGGTGA 1137 50.84 MKTLSSPLSKSLFLISILILLSQPSHQATPSPTPFLPNPRLLKAYSALQAWKHAITADPTNFTSDWYGPNVCNYSGVFCAPAPDDPDILTVAGIDLNHANVSGTLPDDLGLLTDLALFHINSNHFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNKFHGDLPSPLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLNEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLIGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPERPLQRSPEGCKAFYSYPVDCGVFGCTRRPPRPPPPPPSYW 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4728538 4729674 + CePI673135_05g005780.1 Cec05g0578 202381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0578 378 Gene3D Ribonuclease Inhibitor 43 206 IPR032675 -
Cec05g0578 378 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 231 319 - -
Cec05g0578 378 Pfam Leucine rich repeat N-terminal domain 46 79 IPR013210 -
Cec05g0578 378 SUPERFAMILY L domain-like 44 325 - -
Cec05g0578 378 Gene3D Ribonuclease Inhibitor 207 334 IPR032675 -
Cec05g0578 378 Pfam Leucine rich repeat 233 292 IPR001611 GO:0005515(InterPro)
Cec05g0578 378 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 27 372 IPR051582 -
Cec05g0578 378 FunFam Leucine-rich repeat extensin-like protein 1 45 206 - -
Cec05g0578 378 Pfam Leucine Rich Repeat 139 159 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1659 Cec-Chr3:34789556 Cec05g0578 Cec-Chr5:4728538 1.00E-25 dispersed
Cec05g0578 Cec-Chr5:4728538 Cec07g0286 Cec-Chr7:2825988 3.90E-46 dispersed
Cec05g0578 Cec-Chr5:4728538 Cec06g1179 Cec-Chr6:23995130 8.20E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0578 - - - 0.0