Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0641 ATGTCACATTTGAGTTACAACTTTTGGGAACAAAGTTTTGGGAGAGATGGTGGGGAGTTTTTTGTTGATGATTTGTGTGAGCGGGGTGACGGCGACCGGTCAGCTGATGGGCGGTCATACAACAGATTGGTCAATTATCGGCCTTCGTCATTGGAATGGCCATTGGGCTTGCTGTGTTCATCGCCGTGGCCCATTTCAGGTGCATCAATGAACCCAGCAAGATCTTTAGGGCCGGCAATCGTTTCATGGGCTTTCGATGACATATGGATCTATATGACAGCTCCTGTCATCGGAGCCGTTACCGGTGCCTTCTTGAGCGGTGTCCTCCGCCTTCGACCTCCACCGCTCCATTCTTCCTCCTCCCCTTCCAACAGCAGACTTTTTCATCGCTCCTCCTCAGCCAACGTACATCTAATTACTTAG 423 50.59 MSHLSYNFWEQSFGRDGGEFFVDDLCERGDGDRSADGRSYNRLVNYRPSSLEWPLGLLCSSPWPISGASMNPARSLGPAIVSWAFDDIWIYMTAPVIGAVTGAFLSGVLRLRPPPLHSSSSPSNSRLFHRSSSANVHLIT 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5187449 5189214 - CePI673135_05g006410.1 Cec05g0641 202444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0641 140 SUPERFAMILY Aquaporin-like 49 116 IPR023271 -
Cec05g0641 140 PANTHER AQUAPORIN NIP2-1 64 111 IPR034294 -
Cec05g0641 140 MobiDBLite consensus disorder prediction 117 140 - -
Cec05g0641 140 Gene3D Glycerol uptake facilitator protein. 35 112 IPR023271 -
Cec05g0641 140 PRINTS Major intrinsic protein family signature 89 109 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g0641 140 PRINTS Major intrinsic protein family signature 52 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g0641 140 Pfam Major intrinsic protein 55 105 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0641 K09874 - - csv:101203206 92.8189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0641 Cec-Chr5:5187449 Cec05g1274 Cec-Chr5:12427670 4.00E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g437 . . . . . . . Bma05g00938 . . . Cma14g01679 . Car14g01513 . . Cpe03g01417 Bhi01g00854 . . . . . Lcy11g1511 . . . . . . . . . . Cone4ag0210 Lsi05g01452 . . Cme06g00639 . . . . Bpe05g00748 . . . . . Cmo14g01724 . . . . . . . . . . . . . Cla05g00575 Cam05g0630 Cec05g0641 Cco05g0635 Clacu05g0626 Cmu05g0594 Cre05g0662 . Csa03g01364 Chy06g00608 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010672 2 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 32