Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0672 ATGGCGAAATTTTGCTGTTTCAATCTACTGTTTTTCTTCTCATTATCGATCTCATTGCTTCTCCGGCGAGCTTCAAGCTCCTATGCAGGTTCCGCAAGCTCAATCGTCAATCCTGCAAAAGTCAAACAAATTTCATGGAGTCCTCGGGCTTTTGTGTATGAAGGTTTTCTCACGGACTTAGAATGCGATCATCTCATCTCCCTCGCTAAAGCGGAGTTGAAGAGATCTGCTGTCGCGGATAATTTGTCCGGAGAGAGTAAAGTCAGCGAGGTCCGAACTAGCTCTGGGGCGTTTATCCATAAAGCCAAGGATCCTATTGTTTCTGGAATAGAAGACAAAATTGCAGCATGGACATTTCTGCCAAAAGAAAATGGAGAAGACATTCAAGTGTTGAGATATGAATATGGGCAGAAGTACGATGCACACTTTGATTACTTTGCTGACAAGGTTAATATTGCCCGAGGTGGACATCGAATGGCAACCGTTCTCATGTATCTTTCCAACGTAGAAAAAGGCGGTGAAACTGTGTTTCCTTCTGCAGAGGAATCTCAAAGACGCCAGGCTTCGGAAACAAGCGAAGATCTCTCAGACTGTGCAAAGAAAGGGATAGCAGTTAAACCACGGAAAGGCGACGCTCTTCTCTTCTTCAGTCTCCATCCAAATGCTATTCCAGACACAAGTAGTCTACATGGCGGATGCCCTGTGATTGAAGGTGAGAAATGGTCAGCAACAAAGTGGATTCATGTCGATTCTTTCGACACGATCGTGACAGACCATACGAACTGCGCCGATGAAAATCCAAGTTGTGAGAGATGGGCTGAACTCGGTGAGTGCACGAATAACCCGGAGTATATGGTCGGATCTCCCGAGCTTCCTGGCTACTGCAGGAAAAGTTGCCCTCGGCCATCATCGCCGAAACCAAACCAAACCCACTTCAAATTTCTTCATTCTTCACACAAATCCCTTCAAACCCTCTTTCTTAATCTCATTCCTAACATCTCTACCCTACTTCCTTTAGCTCGTTTCATTAAAATGGAGGTGGGATTGATGCAGAGACAGTGGGTTCAGTATATTAAAGGCTTACTCGGTGAGGGTACGCTGGATAGTCAGTATTTGCAGCTTTTGCAACTGCAAGATGAGAGTAATCCAACTTTCGTTTCTGAAGTGGTCACTCTTTTCTTTGAAGATACCGAGGAGCTTCTCAATAAACTGAGAATCGCTATATCACACCCATCTGTTGACTTCAAAAAGATTGATGATCATGTACACCAGCTGAAGGGCAGCAGTTCCAGCATAGGTGCACTTAGAGTGAAAAATGCCTGCATTGACTTCCGCAGCGCCTGCGAGCAACAGAGTCCTGACTGGTGTTCAAGATGCCTGCAACAAGTAGAGCAAGAATTCTATGGTGTGAAGGAGAAGCTCAGTTATTTATATGCACTGGAGAAACGGATTTTGAATGCTGGTGGATCCATTCCCATGGACTTGGGTTTCTAA 1494 44.98 MAKFCCFNLLFFFSLSISLLLRRASSSYAGSASSIVNPAKVKQISWSPRAFVYEGFLTDLECDHLISLAKAELKRSAVADNLSGESKVSEVRTSSGAFIHKAKDPIVSGIEDKIAAWTFLPKENGEDIQVLRYEYGQKYDAHFDYFADKVNIARGGHRMATVLMYLSNVEKGGETVFPSAEESQRRQASETSEDLSDCAKKGIAVKPRKGDALLFFSLHPNAIPDTSSLHGGCPVIEGEKWSATKWIHVDSFDTIVTDHTNCADENPSCERWAELGECTNNPEYMVGSPELPGYCRKSCPRPSSPKPNQTHFKFLHSSHKSLQTLFLNLIPNISTLLPLARFIKMEVGLMQRQWVQYIKGLLGEGTLDSQYLQLLQLQDESNPTFVSEVVTLFFEDTEELLNKLRIAISHPSVDFKKIDDHVHQLKGSSSSIGALRVKNACIDFRSACEQQSPDWCSRCLQQVEQEFYGVKEKLSYLYALEKRILNAGGSIPMDLGF 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5428290 5437776 + CePI673135_05g006720.1 Cec05g0672 202475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0672 497 SMART ShkT_1 261 300 IPR003582 -
Cec05g0672 497 Pfam Hpt domain 388 469 IPR008207 GO:0000160(InterPro)
Cec05g0672 497 Pfam 2OG-Fe(II) oxygenase superfamily 129 248 IPR044862 -
Cec05g0672 497 Gene3D q2cbj1_9rhob like domain 40 249 - -
Cec05g0672 497 FunFam Histidine-containing phosphotransfer protein 1 345 492 - -
Cec05g0672 497 CDD HPT 386 465 IPR008207 GO:0000160(InterPro)
Cec05g0672 497 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 349 482 IPR036641 GO:0000160(InterPro)
Cec05g0672 497 Gene3D HPT domain 341 497 IPR036641 GO:0000160(InterPro)
Cec05g0672 497 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 39 255 IPR045054 GO:0004656(PANTHER)|GO:0005783(PANTHER)|GO:0018401(PANTHER)
Cec05g0672 497 SMART p4hc 48 248 IPR006620 GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0031418(InterPro)
Cec05g0672 497 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 124 249 IPR005123 -
Cec05g0672 497 FunFam Prolyl 4-hydroxylase 4 40 249 - -
Cec05g0672 497 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 382 491 IPR008207 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0672 K00472 - - csv:101215570 534.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0455 Cec-Chr1:4703358 Cec05g0672 Cec-Chr5:5428290 5.00E-47 dispersed
Cec05g0672 Cec-Chr5:5428290 Cec09g1960 Cec-Chr9:36664430 9.60E-93 dispersed
Cec02g1772 Cec-Chr2:35556941 Cec05g0672 Cec-Chr5:5428290 6.40E-47 transposed
Cec04g1770 Cec-Chr4:36637020 Cec05g0672 Cec-Chr5:5428290 3.40E-66 transposed
Cec06g0562 Cec-Chr6:6229488 Cec05g0672 Cec-Chr5:5428290 3.70E-113 transposed
Cec07g1781 Cec-Chr7:33458617 Cec05g0672 Cec-Chr5:5428290 1.20E-41 transposed
Cec03g1727 Cec-Chr3:35546464 Cec05g0672 Cec-Chr5:5428290 2.10E-35 wgd
Cec05g0672 Cec-Chr5:5428290 Cec06g0561 Cec-Chr6:6221455 7.20E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g388 . . . . . Bpe14g01159 . . Cmo08g01164 Cmo17g00280 Cma06g01452 . Car06g01254 Car14g01488 . Cpe08g00223 Cpe03g01398 . . . . . . . Cla06g00522 Cam06g0561 Cec06g0561 Cco06g0568 Clacu06g0549 Cmu06g0545 Cre06g1314 Cone14ag0800 . . . . . Chy11g01453 Cme06g00676 Blo02g00569 . Bda11g00549 . . Bpe13g00640 . Bma06g01526 . Cmo06g01453 Cmo14g01698 . Cma17g00292 Car08g01069 Car17g00269 Cpe12g00244 Cpe17g00106 Bhi12g01760 . . . . . . Cla05g00602 Cam05g0663 Cec05g0672 Cco05g0667 Clacu05g0657 Cmu05g0626 Cre05g0695 Lsi09g01381 Csa03g01401 Chy06g00644 Cme11g01958
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002376 1 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 1 1 2 2 2 1 3 2 1 62