Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g0683 | ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTGCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGTTCCCCTAGGCTTGTGGGCCTGAAACAAGTGTCGCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAAGGGTGGCTCCAATACAGACTGAATTCTCGCCAAGTCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCGGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA | 1164 | 46.22 | MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGARDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSPRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGRVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5601650 | 5604571 | + | CePI673135_05g006830.1 | Cec05g0683 | 202486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g0683 | 387 | CDD | F-box_AtTLP-like | 35 | 79 | - | - | |
Cec05g0683 | 387 | ProSitePatterns | Tub family signature 2. | 372 | 387 | IPR018066 | - | |
Cec05g0683 | 387 | PANTHER | TUBBY-RELATED | 25 | 386 | - | - | |
Cec05g0683 | 387 | FunFam | Tubby-like F-box protein | 92 | 387 | - | - | |
Cec05g0683 | 387 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 387 | IPR025659 | - | |
Cec05g0683 | 387 | Gene3D | Tubby Protein; Chain A | 92 | 387 | IPR025659 | - | |
Cec05g0683 | 387 | Pfam | Tub family | 96 | 382 | IPR000007 | - | |
Cec05g0683 | 387 | ProSitePatterns | Tub family signature 1. | 317 | 330 | IPR018066 | - | |
Cec05g0683 | 387 | SUPERFAMILY | F-box domain | 28 | 78 | IPR036047 | GO:0005515(InterPro) | |
Cec05g0683 | 387 | PRINTS | Tubby superfamily signature | 344 | 363 | IPR000007 | - | |
Cec05g0683 | 387 | PRINTS | Tubby superfamily signature | 317 | 333 | IPR000007 | - | |
Cec05g0683 | 387 | PRINTS | Tubby superfamily signature | 365 | 387 | IPR000007 | - | |
Cec05g0683 | 387 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Cec05g0683 | 387 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Cec05g0683 | 387 | PRINTS | Tubby superfamily signature | 299 | 316 | IPR000007 | - | |
Cec05g0683 | 387 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g0683 | Cec-Chr5:5601650 | Cec08g0729 | Cec-Chr8:19023887 | 1.00E-118 | dispersed | |
Cec07g1124 | Cec-Chr7:26454673 | Cec05g0683 | Cec-Chr5:5601650 | 6.10E-100 | transposed | |
Cec08g0347 | Cec-Chr8:8778268 | Cec05g0683 | Cec-Chr5:5601650 | 2.70E-120 | transposed | |
Cec05g0683 | Cec-Chr5:5601650 | Cec06g0545 | Cec-Chr6:6051805 | 1.10E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29524 | PF01167 | Tub | 3.80E-109 | CL0395 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g0683 | K19600 | - | csv:101217713 | 766.148 |