Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0683 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTGCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGTTCCCCTAGGCTTGTGGGCCTGAAACAAGTGTCGCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAAGGGTGGCTCCAATACAGACTGAATTCTCGCCAAGTCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCGGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 46.22 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGARDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSPRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGRVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5601650 5604571 + CePI673135_05g006830.1 Cec05g0683 202486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0683 387 CDD F-box_AtTLP-like 35 79 - -
Cec05g0683 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cec05g0683 387 PANTHER TUBBY-RELATED 25 386 - -
Cec05g0683 387 FunFam Tubby-like F-box protein 92 387 - -
Cec05g0683 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cec05g0683 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Cec05g0683 387 Pfam Tub family 96 382 IPR000007 -
Cec05g0683 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cec05g0683 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
Cec05g0683 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cec05g0683 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cec05g0683 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cec05g0683 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cec05g0683 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cec05g0683 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cec05g0683 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0683 Cec-Chr5:5601650 Cec08g0729 Cec-Chr8:19023887 1.00E-118 dispersed
Cec07g1124 Cec-Chr7:26454673 Cec05g0683 Cec-Chr5:5601650 6.10E-100 transposed
Cec08g0347 Cec-Chr8:8778268 Cec05g0683 Cec-Chr5:5601650 2.70E-120 transposed
Cec05g0683 Cec-Chr5:5601650 Cec06g0545 Cec-Chr6:6051805 1.10E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29524 PF01167 Tub 3.80E-109 CL0395 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0683 K19600 - csv:101217713 766.148