Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0702 ATGAAGCCGTACGGTCACTCTATTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACACCCCATGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAGGTTACACCAATGCCACCTCCAGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTGGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTTCTGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCTAGGCCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCGGTGCAGAGGGTCGGCACAAGCTTTCAATTCGAATTGAATATGAATTTGAAGCTGTGTTATTCCCACTCGTTTTTTTCCCTCATTTATTGTGGAAAAAGATGTATTTAAGACTCTGGGAGTCATCCCAATGGCAACGTGATCTTGAGAGCAATGATGATGCTTTGCTTACCCAGCAATACTTGAGTCTTTTTGTAAAGCAGGTTCCTGATTTAGTTTGTCTTGAAGAGGGAATCTTTTCAGATTTAGATATCCACTTCCTTTTCCCCTTTCTGAAGGTTACTGTTGGTTTCTAG 1716 47.79 MKPYGHSIEGSHSDPSPEWTASGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTGAEGRHKLSIRIEYEFEAVLFPLVFFPHLLWKKMYLRLWESSQWQRDLESNDDALLTQQYLSLFVKQVPDLVCLEEGIFSDLDIHFLFPFLKVTVGF 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5774244 5778951 - CePI673135_05g007020.1 Cec05g0702 202505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0702 571 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872(InterPro)
Cec05g0702 571 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872(InterPro)
Cec05g0702 571 MobiDBLite consensus disorder prediction 1 44 - -
Cec05g0702 571 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 SMART c3hfinal6 302 329 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 PANTHER PROTEIN PHOSPHATASE RELATED 38 376 IPR050974 GO:0003729(PANTHER)
Cec05g0702 571 MobiDBLite consensus disorder prediction 278 305 - -
Cec05g0702 571 MobiDBLite consensus disorder prediction 278 299 - -
Cec05g0702 571 Gene3D - 37 89 - -
Cec05g0702 571 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 118 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 329 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872(InterPro)
Cec05g0702 571 MobiDBLite consensus disorder prediction 403 476 - -
Cec05g0702 571 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 SUPERFAMILY CCCH zinc finger 306 329 IPR036855 GO:0046872(InterPro)
Cec05g0702 571 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Cec05g0702 571 Gene3D - 90 170 - -
Cec05g0702 571 Gene3D - 300 385 - -
Cec05g0702 571 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872(InterPro)
Cec05g0702 571 MobiDBLite consensus disorder prediction 424 476 - -
Cec05g0702 571 FunFam CCCH type zinc finger protein 300 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1087 Cec-Chr3:22718840 Cec05g0702 Cec-Chr5:5774244 2.30E-21 dispersed
Cec05g0702 Cec-Chr5:5774244 Cec09g2396 Cec-Chr9:40777032 3.20E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29527 PF00642 zf-CCCH 1.60E-07 CL0537 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0702 - - - 0.0