Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0708 ATGCTCGCACTGTTTGCTCTATGCTTTGGACCTAGACGCGCTTTGACGGGGACCAGCCATTTGAAAATCGGTAATAGTCTCATATTTGCATCTGCTAGGGCTTTCTCCTATGCAACTGACGGGAAGCAGAGCAGATTGCTGAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTCAATAAGCGGTTTTCTACTGCTAACGAGGCCTCCTCAAGCAAGTACGTGGAAGATGCTAGCAAAAGCAAGCAAAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCGCAATGGAGTAAGGACGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCAGCTGCAGTAAGGAACCGTTCTACAGAAATGGTTGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGCGTACTGAGAGACAGTGAAAGTGAACAAGAAAGCAACGAAGATTCTGCAATAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAGTAACAACTCTAAAGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCACTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACACCACGTGTTCCTGTATCATATTCATATGATAAAGATAGCAGAGAGAAGCTTTTTTCACCCTCCCGACATAATAGCAAGGCAAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCTCAACTTTCACAAACACCAAATCCAAAAATAGAAGGTCCTGTACTTTCACCTATCCAAAATGACAGGATGCGAAGTGAATCAGACATGATGAGCATGAAGTTTCGTTGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAACGCAGACTATGACCTGGGGAAAAATACTCGTGAGATTCAAAGAAAGGGTAAAAGGTACTATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATTAAGGAAGCTTGTAGTGGGACGGAAGAGGGACAAAAATCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTAGATGTAAAATCTGCGAGATACTCTTTTAAGGGCCCGAGGAAAAGAAGTAAGAAAGCTCTATTCGGAGATGAATCTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCAGACACAAATGCTGAGAGTGAGCCTTCTGCTAAGGTTAAAGAAGAAAATCCTGATGTCACGGACAAGTCTAAAATGAAAGGGAGTCATCCAGTTGCTGGAGCTGAAATCTCTGCTCTCAAAACATCTAAGACGGGAAAAGCTTTTGGCAACAATGTCGGTCCTATTCCTGAAGCAGAGGGAATTCAAGGATCCAATAATGGAAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAAATATCATCTAACGATGAAGATAACAATGATTCTCGTGTCAATGACAATCTGAAAATCAAGGCTGCAGATGAAGCAAAGAGTTCCGTTGGTAAAGTTAAACGTTCCCCTCATAATGCTGGACCTGCAAAGTCTGGCAAAATATCAAAACCTATAGATCATCACTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAACACAAGTTCTAACAAATAATCCAACCAGCTTACCTACCAAACTTAGGAGCAGGCGGAAGATGAACCTGGGGAAGCCACAAAGAGATTCAAAGCTTGCTGATAATACTTCGATCGATCAACTCAATATAACTGCTCAATCAATAGATGATAGACCACATGATCTCAAGGAGCGGCATTCTAATTGCCTATCTTGGCATAAATTGCGCAGATGGTGTGTTTTTGAGTGGTTCTATAGTGCAATCGATTTTCCATGGTTTGCAAAATGTGAGTTCGTAGAGTACTTAAATCACGTTGGATTAGGTCATATTCCTAGATTGACACGTGTTGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGACCACGGAGATTCTCAGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAGCGAGTTATTGCCATTCATCCAAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGGGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGGCTCTTGATAAAATATTTGGGAATCTCAACGATGCTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATGAAATCAACCAGCAATGATAAACTTGAAAGCACGGAGGGTTCTGTGTATATTTCCCCTTCCACTCATCACATCAACAAATTAATTAAACAAGCAAAGGTTGACCTTGGGTGCTCTAATCTACAAGCTAAATTTGGGCTTAGTGAGACTGTCGGTATTCAACAGGAGGCAAGTTCCCAACCTTCTGCCCTTACTCAAATTCAAGCAAAAGAAGCTGATGTTCATGCTCTTTCTGAATTGTCACGTGCACTTGACAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGTTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTACTATTACAGTTGAATGAAGTTAATGAACAGGTTTCCTCTGCTCTGTATTGCTTGAGGCAGCGCAATACGTATCAAGGGACTTCACCATTGATGTTCCTCAAGCCAGTGCATGATTTGGGTGACCCTTGTTCTCATTCTCAAGAACCCGGTTCCCATGTGGCTGAAATTGTTGGAAGTTCCAGAGCAAAGGCTCAAACAATGATCAATGAAGCAATGCAGGCAATTCTAGCTCTGAAAGAAGGAGAAGGTAATTTGGAGAATATTGAAGAAGCCATTGATTTTGTGAGTAATAGACTCTCAGTGGATGATTTGGCCTGGCCAACTGTGAGAACAACAGCTGCAGATACTAGTAATGCCGCTCCAGTATCTCAGAATCATTTCAATGCGTGTACATCAAACCCGTCGAGTGCTAATTATGTATTTGGTTCCAAGTCCAATGGCCCATCCGACAAGACTGAAGTGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAACGACAGTTTCCACCATCTGATGTCGCTCAAGTACTGGATTCTGCTGTCACTAGTTTGCAGCCTTGTTGTCCTCAGAACCTTCCACTATATGCGGAGATACAGAAATGCATGGGAATTATAAGGAGCCAGATACTTGCGCTTATACCCACATAG 3636 42.05 MLALFALCFGPRRALTGTSHLKIGNSLIFASARAFSYATDGKQSRLLKLMAPSRKSRSVNKRFSTANEASSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNEDSAIRKPQKRLRGKSRSNNSKGLDAHFGDASQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSREKLFSPSRHNSKAKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGPVLSPIQNDRMRSESDMMSMKFRCSEMDEGGCELSLGSTGADNADYDLGKNTREIQRKGKRYYGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDLDVKSARYSFKGPRKRSKKALFGDESSAFDALQTLADLSLMMPDTNAESEPSAKVKEENPDVTDKSKMKGSHPVAGAEISALKTSKTGKAFGNNVGPIPEAEGIQGSNNGNRKRKLKSSPFKISSNDEDNNDSRVNDNLKIKAADEAKSSVGKVKRSPHNAGPAKSGKISKPIDHHSSSSTDHKREDGDYALSTTQVLTNNPTSLPTKLRSRRKMNLGKPQRDSKLADNTSIDQLNITAQSIDDRPHDLKERHSNCLSWHKLRRWCVFEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVALDKIFGNLNDAKINGLLKEAKIEDYMKSTSNDKLESTEGSVYISPSTHHINKLIKQAKVDLGCSNLQAKFGLSETVGIQQEASSQPSALTQIQAKEADVHALSELSRALDKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVNEQVSSALYCLRQRNTYQGTSPLMFLKPVHDLGDPCSHSQEPGSHVAEIVGSSRAKAQTMINEAMQAILALKEGEGNLENIEEAIDFVSNRLSVDDLAWPTVRTTAADTSNAAPVSQNHFNACTSNPSSANYVFGSKSNGPSDKTEVEIPSELIAHCVATLLMIQKCTERQFPPSDVAQVLDSAVTSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5820426 5836940 + CePI673135_05g007080.1 Cec05g0708 202511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0708 1211 SMART sant 92 140 IPR001005 -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 165 209 - -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 577 595 - -
Cec05g0708 1211 SMART DIRP_2 679 780 IPR033471 -
Cec05g0708 1211 ProSiteProfiles SANT domain profile. 91 128 IPR017884 -
Cec05g0708 1211 PANTHER LIN-9 50 1211 IPR010561 GO:0000003(PANTHER)|GO:0003677(PANTHER)|GO:0005654(PANTHER)|GO:0006351(InterPro)|GO:0006357(PANTHER)|GO:0017053(InterPro)|GO:0051726(PANTHER)
Cec05g0708 1211 Pfam DIRP 678 779 IPR033471 -
Cec05g0708 1211 SUPERFAMILY Homeodomain-like 91 138 IPR009057 -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 245 271 - -
Cec05g0708 1211 Coils Coil 731 751 - -
Cec05g0708 1211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 130 IPR017930 -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 193 209 - -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 535 561 - -
Cec05g0708 1211 Gene3D - 28 148 - -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 458 476 - -
Cec05g0708 1211 Pfam Myb-like DNA-binding domain 95 130 IPR001005 -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 165 183 - -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 229 271 - -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 452 595 - -
Cec05g0708 1211 Coils Coil 937 960 - -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 285 308 - -
Cec05g0708 1211 Coils Coil 1063 1083 - -
Cec05g0708 1211 CDD SANT 96 130 IPR001005 -
Cec05g0708 1211 MobiDBLite consensus disorder prediction 286 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0708 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1637 Cec-Chr2:33931139 Cec05g0708 Cec-Chr5:5820426 9.50E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29531 PF06584 DIRP 2.50E-30 No_clan Cec TF