Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0742 ATGTCTGATGATGGAGGGAAGAACAAGAAAGCTGCTCTCATCGGCGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCTGTGGCAGTCGGTGTCAATCGCAAAGACTCCGACATCGCTGGTGGCGGCGGTGCCACGGCGGAGATCTCCACCTCCACCAAAGCCATTAAGGCTCTCTGTCAGCCCACCGATTACCAAGAAACCTGCGAGACAGCTCTGTCCCAAGCCGGGACCAACACAAGCGACCCACGTGAGCTAATCAAAGCCGGATTCCATGTCGCCGTCGACCAAATCAAATGGGCCATCGGAAATTCCTCCACCTTGAAAGATTCCGCCAGTGATCCCATGGCTAAACAAGCTCTTGACGCTTGTGGCGAGCTAATGGATTACGCAATTGACGATCTCTTAATTTCCTTTGACAGAATCACAGACAATTTCGATATCCAGAAAATTGATGATTACATTGAGGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCTTAGATGGATTCGAAAATGTCACCGGAGATACAGGGGAAAAGATGAAGAATTTGTTGAAAATGTCAAAAGAATTGACAGCTAATGGGCTTGGAATGGTTAGTGAAGTTACTTCCATTATGACCTCTTTTGGGCTTCCATCGGCTGGACGACGGCTGTTGGAGGAATCCGATGAACAAGAGAATGAGCCGTCGTGGGTTAGTGACAGACGTGGGCTACTTCAAGCCACCGGCGCCACCATCAAGGCGGATGTTGTGGTGGCGAAAGATGGAAGTGGAAAGTACAAAACGGTGAGTGAAGCCTTAAATGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTTATGTTAAGGCCGGAGTTTATCAAGAACAAGTAATGGTAGAAAAAAGTATGACTTGGGTAATGATGATCGGAGATGGGCCGACTAAAACCAAGATCACCGCCGGCAAGAACTTCATTGACGGAACACCCACCTTCAAAACCGCTACTGTCGCGGTGATTGGAACCAACTTCATCGCGAAGGACATGGGGTTCGAGAACTCTGCCGGACCAGAGAAGCACCAAGCAGTGGCACTCCGAGTTCAATCTGACATGTCAATCTTTTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACTCACGCTCACCGTCAATTCTACCGAGACTGCACCATTACCGGCACCATCGATTTCATCTTCGGCAACGGCGCCGTCGTCTTCCAGAACTGCAAGATCCTCGTGAGGAAGCCAATGGAGAATCAACAATGCATCGTCACCGCACAAGGTCGAACTCAACGAAAGGAGCCCACCGCCATAATCTTGCAGAATTGTGTCATCTCCTCTGACCCTGACTTCTTCCCCGTCCGCCACATCCACAAAGCCTACCTCGGTCGTCCGTGGAAGCAATATTCAAGAACCATCATCATGCAGTCCCAAATTGATGATTTGATCCAACCTGAAGGGTGGCTCCCATGGATGGGCGATTTTGCTCTCAACACTCTGTTTTACACAGAGTACAATAACAGAGGACCTGGCGCCGCAAAGGATAAGCGAGTTAAGTGGAGGGGAATTAAGCAGATCACGCCGGAGCACGCCCTCGATTTCACCGCTGGGAGATTTATTCGCGGTGATCCATGGATCAAGCCCACTGGAGTTCCGTACACTTCCGGCATGATGGCAGTATAA 1707 48.97 MSDDGGKNKKAALIGVSSLFLVAMVVAVAVGVNRKDSDIAGGGGATAEISTSTKAIKALCQPTDYQETCETALSQAGTNTSDPRELIKAGFHVAVDQIKWAIGNSSTLKDSASDPMAKQALDACGELMDYAIDDLLISFDRITDNFDIQKIDDYIEDLKVWLSGALTYQETCLDGFENVTGDTGEKMKNLLKMSKELTANGLGMVSEVTSIMTSFGLPSAGRRLLEESDEQENEPSWVSDRRGLLQATGATIKADVVVAKDGSGKYKTVSEALNDVPKKSNKTFVIYVKAGVYQEQVMVEKSMTWVMMIGDGPTKTKITAGKNFIDGTPTFKTATVAVIGTNFIAKDMGFENSAGPEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMENQQCIVTAQGRTQRKEPTAIILQNCVISSDPDFFPVRHIHKAYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWMGDFALNTLFYTEYNNRGPGAAKDKRVKWRGIKQITPEHALDFTAGRFIRGDPWIKPTGVPYTSGMMAV 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6111351 6113137 - CePI673135_05g007420.1 Cec05g0742 202545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0742 568 Gene3D - 249 565 IPR012334 -
Cec05g0742 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 208 IPR035513 -
Cec05g0742 568 Pfam Plant invertase/pectin methylesterase inhibitor 54 202 IPR006501 GO:0004857(InterPro)
Cec05g0742 568 CDD PMEI-like_3 58 210 - -
Cec05g0742 568 Pfam Pectinesterase 255 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec05g0742 568 FunFam Pectinesterase 249 565 - -
Cec05g0742 568 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Cec05g0742 568 SUPERFAMILY Pectin lyase-like 250 564 IPR011050 -
Cec05g0742 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 208 IPR035513 -
Cec05g0742 568 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Cec05g0742 568 FunFam Pectinesterase 52 209 - -
Cec05g0742 568 PANTHER PECTINESTERASE 10 556 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec05g0742 568 SMART PMEI_2 51 204 IPR006501 GO:0004857(InterPro)
Cec05g0742 568 NCBIfam pectinesterase inhibitor domain 51 203 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0742 Cec-Chr5:6111351 Cec11g0021 Cec-Chr11:306833 3.00E-135 dispersed
Cec03g0797 Cec-Chr3:9176741 Cec05g0742 Cec-Chr5:6111351 1.70E-117 transposed
Cec03g1797 Cec-Chr3:36200064 Cec05g0742 Cec-Chr5:6111351 4.00E-199 wgd
Cec05g0742 Cec-Chr5:6111351 Cec06g0498 Cec-Chr6:5588404 2.00E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0742 K01051 - csv:101212686 1009.59