Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0752 ATGTCTACAGCCAGTTCGAGTTCTGTAAGGAAAGCTGGTGAAGCTGTTCCCGACCAGTTTCCGGCTGGCCTTCGTGTTCTGGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGAAGTAACAAATTGTAGTCGAGCCGAGGATGCACTGTCTCTTCTCAGACAGTACAAAAACGGGTTCGATATCGTTTTGAGTGACGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCCGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCACGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGATGTGTTGACGATGCAGATCGGCAGCAAAAAACTAATGAAGATGCAGATTATTCATCATCTGCTAATGAAGGGAGTTGGAGGAATTCAAAGAGAAGGAAGGATGACGTTGAAGACTCTGAGGAGAGGGACGATTCGTCGACCCTAAAGAAACCAAGGGTCGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTACCTGAGAAGACTAAGTGGAATCACGCAACACCAGAGTAATTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGTCCCGTCGATGAATGGCCTTGATCTTCAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCCGGCATGCCTATGCCTCTTGTCGATCAGAGGAACCACATTTTTAGCTTTGAAAATCCGAAGTTGAGATTCAGTGATGGGCAACAGCCACACTTGAATGGTAATAAGCCAATGAACCTACTTCATGGAATTCCAACAACTATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAAGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTCGAGCGCAGATCCTTAACGAAAGCACCTCAACTAGCGTAACAAGGCTTCCACCAACAATGCAGCAGTCAATTTTGCCGAATGGAACTACTGGTGCAGTTTTGACTAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCTTGAATCAAACTGCAGAATTGCCGGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGCATTGTACCAAAGGGAAGATTTCCAGACGAGGTTAGCTCCGACATTAAAGGATCTGAAAGTTTTGTGTCAAGCTATGATATGTTTAGGGATCTCCATCCTCAGAAACCCCACGATTGGGACTTGCAACACGTAGGGCTGACCTTCGATACATCTCAAGGTAGTCTCGACATTCCACCTTCTGCTTTTGCTCACCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAATAGGAGTGCATCTACCGCAGGCAAGGCCATGTTCTTATTGGAAGAAGGAAGTGACAATGGTAATGCACAAAGTGTGGGCCATCAACTCAACCCTCTTTTCGTCGATGGTTCGGTGAGAGTTAAAGCTGAAAGAGCTCCTGATACTAGCAATCAAACAGACCTTTTCTCTGACCATTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAAGGAAGCATTGCAACAGCTGAAAGTGAATTGGAATGGGTGTTTCATCATAATACTCCTGTTTAG 1986 44.86 MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTNCSRAEDALSLLRQYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDADRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDSEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFVPSMNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFSDGQQPHLNGNKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGSQSSSQLMQTPQPQARAQILNESTSTSVTRLPPTMQQSILPNGTTGAVLTRNEFANNSRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVSSDIKGSESFVSSYDMFRDLHPQKPHDWDLQHVGLTFDTSQGSLDIPPSAFAHQGYASSQQNGQNRSASTAGKAMFLLEEGSDNGNAQSVGHQLNPLFVDGSVRVKAERAPDTSNQTDLFSDHFGQEDLMSALLKQQQGSIATAESELEWVFHHNTPV 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6209066 6212226 + CePI673135_05g007520.1 Cec05g0752 202555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0752 661 Gene3D - 201 263 - -
Cec05g0752 661 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cec05g0752 661 CDD REC_typeB_ARR-like 26 140 - -
Cec05g0752 661 MobiDBLite consensus disorder prediction 180 201 - -
Cec05g0752 661 MobiDBLite consensus disorder prediction 154 201 - -
Cec05g0752 661 FunFam Two-component response regulator 200 263 - -
Cec05g0752 661 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Cec05g0752 661 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cec05g0752 661 SUPERFAMILY CheY-like 23 147 IPR011006 -
Cec05g0752 661 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677(InterPro)
Cec05g0752 661 PIRSF RR_ARR_type-B 5 651 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cec05g0752 661 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 346 IPR045279 GO:0009736(InterPro)
Cec05g0752 661 Gene3D - 24 158 - -
Cec05g0752 661 FunFam Two-component response regulator 24 161 - -
Cec05g0752 661 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Cec05g0752 661 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Cec05g0752 661 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0752 Cec-Chr5:6209066 Cec05g1819 Cec-Chr5:30140620 6.60E-89 dispersed
Cec08g1802 Cec-Chr8:29056137 Cec05g0752 Cec-Chr5:6209066 1.30E-80 transposed
Cec05g0752 Cec-Chr5:6209066 Cec06g0481 Cec-Chr6:5418126 2.70E-212 wgd
Cec05g0752 Cec-Chr5:6209066 Cec09g0534 Cec-Chr9:4593510 3.60E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29534 PF00072 Response_reg 1.50E-22 CL0304 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0752 K14491 - csv:101209013 1217.99