Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0858 ATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCTTCACCAATCAAGTCGTTACTCAGGGTTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAAGCAACCTCGTCTTCAATGTCATTCCCTCCATTGGCTCCCAGTACTAATTCTGATTGGGCTCAATCTGGCCGTGGAATGTCCACCGATTCCGCTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCACGGCGAAATGTTGGTCATCGGCGTGCCCATTCAGAGATCTTGACCCTCCCAGATGATATTTGTTTCGATAGTGATCTTGGTATCATTGGTGGGGCTGATGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGCGATTCATCTTCCCCTCTTGTAGAAGCAGCAGCAACTTCGACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCTCTGGGTCTGACGAAGCCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCTTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCAAGGTCAAAGGAAAGAAAGATGCGATACATTGCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCTTTGTCCACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAAGTTCACCTGCAAGACGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATTTGAAAGTCTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATTACAAACTTTGCTTCCTTTGGAGCCGGCCAACAATTCTATCCTCCAAACAATCAAGCAATGCATACTTTGTTGACTGCACAGCAGTTTCAACAACTTCAAATACAATCCCAACAGCAACAGCAACAGCAACAGCATTTTCAGTACCAACAGCTGCATCAGCTTCAACAACAACAGGCTGGAGACATCAGAATGAAAGGATCCATACCTCCTCAAAGTTCAAAAGACTCTGCATCGGACACAAAGCCGTCTACCACTTGTTGA 1236 45.47 MDKEKPQCHGGGFLHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPSTNSDWAQSGRGMSTDSARFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGAGQQFYPPNNQAMHTLLTAQQFQQLQIQSQQQQQQQQHFQYQQLHQLQQQQAGDIRMKGSIPPQSSKDSASDTKPSTTC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7275556 7280980 - CePI673135_05g008580.1 Cec05g0858 202661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0858 411 SMART brlzneu 218 282 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0858 411 Gene3D - 221 273 - -
Cec05g0858 411 MobiDBLite consensus disorder prediction 382 411 - -
Cec05g0858 411 SUPERFAMILY Leucine zipper domain 222 272 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0858 411 Coils Coil 238 307 - -
Cec05g0858 411 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 283 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0858 411 MobiDBLite consensus disorder prediction 394 411 - -
Cec05g0858 411 MobiDBLite consensus disorder prediction 17 69 - -
Cec05g0858 411 MobiDBLite consensus disorder prediction 70 86 - -
Cec05g0858 411 CDD bZIP_plant_RF2 223 272 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0858 411 MobiDBLite consensus disorder prediction 1 86 - -
Cec05g0858 411 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 383 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec05g0858 411 FunFam probable transcription factor PosF21 221 274 - -
Cec05g0858 411 Pfam bZIP transcription factor 222 270 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0858 Cec-Chr5:7275556 Cec07g0571 Cec-Chr7:7129831 3.70E-50 dispersed
Cec05g0855 Cec-Chr5:7241221 Cec05g0858 Cec-Chr5:7275556 1.80E-153 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29544 PF00170 bZIP_1 1.00E-08 CL0018 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0858 - - - 0.0