Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0879 ATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAATGCTGAGAGTTACACGAAAGATGTCGGCTCCAAGTGCCGAAACGGGAAGGAAAAGGCAGCTTGGGCTGATTGTTTAAAGCTTTACCAAAACACCATCCTTCAACTCAACCAAACTTTAGATTCCTCTACTAGCTGTACTGATTTCGATATCCAAACCTGGCTCAGTACTGCCTTAACCAACCTCGAAACATGTCGAACCGGGTTCGCCGAGCTTAATGTTTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACAAGGCTAATAAGCAACAGTTTGGCTATTAACAATGCTTCAGGAGGTGGGGTATTGGGGAAGGAAACATATAAAAAGGGTTTTCCAAGTTGGGTTTCAGGTGGTGATAGGAGGTTATTGCAGTCGTCGTCGTCATCATCTTCAATAAAGGCGGACATTGTGGTGGCTCAGGACGGGTCTGGTAATTATACGACGGTCGGAGCTGCGGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGTTGATTGGAGATGGAATGAGATTTACTTTCATTACTGGAAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGAGGCATCACATTCCGAAACACCGCAGGTCCTGAAAACCATCAAGCAGTAGCTGTCCGGTCAGGCGCGGATCTTTCGGTTTTCTACCGTTGTGCATTTGAAGGATATCAAGACACCCTCTACGTGCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGTACAGTAGATTTCATATTTGGAAATGGTGCAGTTGTTGTACAAAACTGCATGATTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTGACCGCTCAAGGACGAACTGACCCAAATCAAAACACTGGCATTTCAATTCACAATTCACGAGTGATGGCTACAGATGATTTGAAAGCAGTGGAGAGCAGAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTTGATAATTTGGTTGATCCAGTGGGTTGGTTGGAATGGGATGGTGAATTTGCACTTCATACTTTATATTATGGAGAGTATAAGAATATTGGTCCTCGTTCATCCACTACTCAGCGAGTGAATTGGAAAGGCTATCGTGTTATAACCAATGAAACTGAGGCATCAGAGTTTAGTGTCCAAAATTTCATTGCTGGCCAGTCTTGGTTGCCGGATACAGAGGTCCCATTCACTCCTGGACTTTAG 1407 42.79 MTEFKKMVIQFAMERALNAESYTKDVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTSCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTRLISNSLAINNASGGGVLGKETYKKGFPSWVSGGDRRLLQSSSSSSSIKADIVVAQDGSGNYTTVGAAVEEAGKRKGNGRFVIQVKRGVYEENVEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVAVRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNGAVVVQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKAVESRVKTYLGRPWKEYSRTVFMKTYLDNLVDPVGWLEWDGEFALHTLYYGEYKNIGPRSSTTQRVNWKGYRVITNETEASEFSVQNFIAGQSWLPDTEVPFTPGL 468
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 7607139 7609791 - CePI673135_05g008790.1 Cec05g0879 202682
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0879 468 Pfam Plant invertase/pectin methylesterase inhibitor 4 114 IPR006501 GO:0004857(InterPro)
Cec05g0879 468 Pfam Pectinesterase 156 453 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec05g0879 468 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 116 IPR035513 -
Cec05g0879 468 Gene3D - 149 468 IPR012334 -
Cec05g0879 468 SMART PMEI_2 1 114 IPR006501 GO:0004857(InterPro)
Cec05g0879 468 NCBIfam pectinesterase inhibitor domain 3 116 IPR006501 GO:0004857(InterPro)
Cec05g0879 468 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 117 IPR035513 -
Cec05g0879 468 ProSitePatterns Pectinesterase signature 2. 301 310 IPR033131 -
Cec05g0879 468 CDD PMEI-like_3 3 117 - -
Cec05g0879 468 FunFam Pectinesterase 150 468 - -
Cec05g0879 468 SUPERFAMILY Pectin lyase-like 151 467 IPR011050 -
Cec05g0879 468 PANTHER PECTINESTERASE 4 459 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0477 Cec-Chr1:4871421 Cec05g0879 Cec-Chr5:7607139 1.30E-196 dispersed
Cec01g0644 Cec-Chr1:6986460 Cec05g0879 Cec-Chr5:7607139 2.80E-127 dispersed
Cec02g0065 Cec-Chr2:611801 Cec05g0879 Cec-Chr5:7607139 8.70E-85 dispersed
Cec05g0277 Cec-Chr5:2278725 Cec05g0879 Cec-Chr5:7607139 1.30E-107 dispersed
Cec05g0278 Cec-Chr5:2294046 Cec05g0879 Cec-Chr5:7607139 1.70E-153 dispersed
Cec05g0879 Cec-Chr5:7607139 Cec10g0587 Cec-Chr10:7643750 4.90E-155 dispersed
Cec05g0879 Cec-Chr5:7607139 Cec05g0882 Cec-Chr5:7633724 6.40E-06 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0879 K01051 - csv:101211449 852.432