Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0895 ATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACGAATGATGAAGCCCTAGACAGCTTCCAGGAAGCTCCAAGAACAGAAGCCCTAAAATCAACCGGTGAGTCTAAAGTGACGGAGCTCGCGGCAGCTGCTCCACCACCGGGGTTTTCAGCGGCGGCTGATGCACCACCGGCGAGTGTAGCGGTTTCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGATGGGAAGCGGTCACTGACATTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACTGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAATCAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGGGCTATTTGCATTCTTTCTGCAAATGGTACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACGTATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCTACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCGCTTGCCGGTCAAGATGGGCGAGTCGTTGGCGGTGGACTTGCCGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTAGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAGAAGCCAAAAAAGCCTAGAAACGAGTCCACAACCATTTTCTTTCCTCCCGTCAGCACTGTCACTGGTGAAGAAATGAAGATAATGTATCCTGGCGGTAACAAGCCTATTCTCACGACACCTTCCTATCAAGAACAACATAATCCACCGTCCCCTAGCCCGGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGATCAAGAACCAAAAACACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1053 47.96 MEEKETGVSRFTVTNDEALDSFQEAPRTEALKSTGESKVTELAAAAPPPGFSAAADAPPASVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIIKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPVSTVTGEEMKIMYPGGNKPILTTPSYQEQHNPPSPSPVTGFKISSTDNLPLSDQEPKTQSQSNCEVSC 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7744480 7748368 - CePI673135_05g008950.1 Cec05g0895 202698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0895 350 Gene3D - 145 275 - -
Cec05g0895 350 CDD DUF296 144 258 IPR005175 -
Cec05g0895 350 MobiDBLite consensus disorder prediction 297 350 - -
Cec05g0895 350 FunFam AT-hook motif nuclear-localized protein 1-like 145 276 - -
Cec05g0895 350 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Cec05g0895 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Cec05g0895 350 MobiDBLite consensus disorder prediction 1 87 - -
Cec05g0895 350 MobiDBLite consensus disorder prediction 11 35 - -
Cec05g0895 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 264 - -
Cec05g0895 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 309 IPR039605 GO:0003680(InterPro)
Cec05g0895 350 MobiDBLite consensus disorder prediction 302 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0895 Cec-Chr5:7744480 Cec11g0049 Cec-Chr11:632015 2.30E-64 dispersed
Cec01g0513 Cec-Chr1:5231197 Cec05g0895 Cec-Chr5:7744480 1.90E-88 transposed
Cec01g0352 Cec-Chr1:3658922 Cec05g0895 Cec-Chr5:7744480 1.50E-70 wgd
Cec05g0895 Cec-Chr5:7744480 Cec06g0035 Cec-Chr6:362714 2.00E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0895 - - - 0.0