Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0918 ATGGGAAGGGGAAAAGTAGTGCTTGAGAGGATAGAGAACAAAGTGAATAGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCCTGTGAGCTCTCTGTGCTCTGTGATGTTGATGTTGCTCTCATCATTTTCTCTAGTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGTATAATCTTGAGAAACAGTTGGACAAGACTCTTTCACACGCTAGACAGCGGAAGGCTGAGATAATGCTTCAAAAATTAGCAGACTTACGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGGTACTTTGA 513 41.91 MGRGKVVLERIENKVNSQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELYNLEKQLDKTLSHARQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKVL 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7959993 7967344 - CePI673135_05g009180.1 Cec05g0918 202721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0918 170 Gene3D - 14 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0918 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0918 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0918 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0918 170 ProSiteProfiles K-box domain profile. 85 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec05g0918 170 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0918 170 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec05g0918 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0918 170 Pfam K-box region 89 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec05g0918 170 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 168 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec05g0918 170 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0918 170 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cec05g0918 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0918 Cec-Chr5:7959993 Cec07g1717 Cec-Chr7:32721105 1.30E-41 dispersed
Cec05g0918 Cec-Chr5:7959993 Cec05g0925 Cec-Chr5:8073960 8.00E-31 proximal
Cec05g0918 Cec-Chr5:7959993 Cec06g0024 Cec-Chr6:275717 3.10E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29548 PF01486 K-box 1.60E-23 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0918 K09264 - csv:101212022 309.301